SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18696

Length: 923 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18696 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19069	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH	-	-	90%
FL-Next	tr=Actin 4; Picea abies (Norway spruce) (Picea excelsa).	-	-	98%
Blast2go	protein	-	-	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin, conserved site	IPR004001	-	0.0	-
Sma3	Actin-like	IPR004000	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C3VIW6

Fln msg: your sequence is shorter than subject: 275 - 377

Fln protein: TLCFSRGTINPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTTAEREIVRDMKEKLAYVSLDFEQEMETAKSSSSLEKSYELPDGQVITIGAERFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITSLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF*

Protein Length: 276

Fln nts: ACCCTGTGCTTCTCACGAGGCACCATTAACCCCAAGGCTAATAGAGAGAAGATGACGCAGATAATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATCCAGGCAGTACTTTCTCTGTATGCAAGTGGACGAACCACTGGTATTGTGCTTGATTCTGGTGATGGTGTCACACACACTGTCCCAATTTATGAGGGATACGCTTTGCCTCATGCCATACTCAGACTGGACCTTGCTGGGCGTGATCTGACGGATGCATTGATGAAGATTCTTACAGAACGTGGGTACACCTTCACCACCACCGCAGAGCGCGAGATTGTCCGAGATATGAAGGAGAAATTAGCCTATGTATCTCTAGATTTTGAACAGGAGATGGAGACTGCAAAATCTAGCTCTTCATTGGAAAAGAGCTATGAGCTTCCTGATGGCCAGGTAATCACCATCGGTGCAGAACGGTTCAGATGTGCAGAAGTGCTGTTCCAGCCATCTTTAATAGGAATGGAAGCTGCTGGAATCCATGAGACTACTTACAATTCTATTATGAAGTGTGATGTGGATATTCGTAAAGACTTGTATGGGAATATTGTGCTCAGTGGCGGTTCCACAATGTTTCCAGGGATTGCAGATCGAATGAGTAAGGAAATTACTTCACTGGCTCCCAGCAGCATGAAGATTAAGGTGGTGGCACCTCCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTTTGGCTTCTCTGAGTACTTTCCAGCAGATGTGGATTTCAAAATCAGAATATGATGAGTCTGGCCCCTCAATTGTTCACAGGAAGTGCTTCTAG___AGTTTTGGACGTTTGGTACTTCTATCTAGGAGGAGAACTGGATGCATATGCCTTGGTAGTTATTAGGTTCTATGGAGGACTAGCATTGTAAAGAGAGG

Fln Alignment:

biogeco2_mira_rep_c18650___INPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTTAEREIVRDMKEKLAYVSLDFEQEMETAXXXXXXXXXXXLPDGQVITIGAERFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITSLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF
C3VIW6__________________LNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTTAEREIVRDMKEKLAYVSLDFEQEMETAKTSSSLEKSYELPDGQVITIGAERFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITSLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYEESGPSIVHRKCF

SNPs (tot: 3)

Position	A %	C %	T %	Probability
348	80	20		0.995493
349		20	80	0.995493
351		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain