SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18691

Length: 873 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene18691

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7791	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	laccase 90c	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Laccase.	EC:1.10.3.2	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	74%
Blast2go	lignin catabolic process	GO:0046274	Biological Process	74%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	copper ion binding	GO:0005507	Molecular Function	74%
Blast2go	laccase activity	GO:0008471	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	apoplast	GO:0048046	Cellular Component	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 290 - 570

Fln protein: KAEYNATLHWHGVEQLRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHEFTVVAVDACYTKPYKTDVLVISAGQTTDVLITANQSVGRYYMAARAYQNQAAGDFTNTTTTAILEYIGSENSTRPILPSLPAYNDTATVTRFGRALRSLASQEYPVNVPHTIDESLISTVGL

Protein Length: 291

Fln nts: CAAGGCTGAGTACAATGCTACTCTTCACTGGCATGGAGTGGAGCAGTTGCGTACGGCATGGGCTGATGGACCTGCATATGTTACACAATGCCCAATTCCACCAGGTGGTCGTTACACATACAGATTCAACATCTCTGGACAAGAAGGAACCGTGTGGTGGCATGCCCATTACTCATGGCTCCGAGCTACTGTGCATGGAGCTTTTGTAATCCTTCCTAAGAAAGGAAGCTCATATCCCTTTTCTAAACCCCATGCCGAAATTCCTATTGTAATAGGCGAATGGTGGAACGCTAACCCCATCGCCGTTATAGACGAAGCGGTTCGCACAGGTGGTGCGCCTAATTTATCCGATGCCTTCACCATAAATGGACAGCCAGGAGATCTGTTTAACTGCTCTACCTCGGGAACATTTCGCCTCCCTGTAAAAAGTGGAGAAACGTACCTTCTGCGGATTGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGCCACGAATTTACAGTGGTAGCTGTGGATGCTTGTTACACCAAGCCATACAAAACAGATGTGCTCGTCATATCTGCCGGCCAGACGACAGATGTTCTTATCACGGCCAACCAGTCTGTGGGCAGATACTATATGGCCGCCCGAGCGTATCAAAATCAAGCGGCAGGCGATTTCACCAACACCACAACAACTGCCATTCTAGAGTACATTGGAAGTGAAAATTCTACGCGCCCAATTTTGCCTAGCCTTCCAGCCTACAACGACACTGCCACTGTCACTAGATTTGGCAGAGCACTGCGAAGCCTGGCATCCCAGGAGTACCCTGTGAATGTTCCGCACACAATAGATGAAAGCCTCATCTCAACGGTTGGACTGGG

Fln Alignment:

biogeco2_mira_rep_c18610___KAEYNATLHWHGVEQLRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHEFTVVAVDACYTKPYKTDVLVISAGQTTDVLITANQSVGRYYMAARAYQNQAAGDFTNTTTTAILEYIGSENSTRPILPSLPAYNDTATVTRFGRALRSLASQEYPVNVPHTIDESLISTVGL
C0PRA7__________________RAQHNATLHWHGVKQLRTGWADGPAYITQCPIPPGGHYTQRFTITGQEGTLWWHSHISWLRATVHGAIVILPQRGSLYPFPKPRAEIPIIIGEWWNKDPITVINQAILTGGAPNLSDAFTINGQPGDLYPCSTSETFRLPVKRGETYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
512		33		66	0.997452
518	50		50		1.0
592	75		25		0.996473
759	66			33	0.997464
760	66		33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain