SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18681

Length: 844 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18681 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8172	4/11
SustainPine v2.0	sp_v2.0_unigene19302	7/11

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase 2 [Musa acuminata AAA Group]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	probable pectate lyase 15	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 281 - 426

Fln protein: GIGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKREDNNENEWRQWNWRSEGDMLLNGA

Protein Length: 282

Fln nts: GGCATTGGCTTCGGCAGGAATGCTATTGGAGGCAAGAATGGGAGGTTTTACCGGGTCACGGATCCCAACGATTACGATGCTGTGAACCCGAGACCGGGCACTCTGCGTCATGCCGTGATTCAAACAGAGCCTCTCTGGATCGTCTTCGAGAGAGACATGGTGATCACACTGAAGGAGGAGCTGATCATGAACAGTTTCAAGACAATTGACGGAAGGGGCGTCAATGTCCACATTGCAAACGGGCCCTGCATCACTGTTCAGTATGTGACTAACATCATTATACATGGCATTCACGTTCATGATTGTAAGCCTGCAGGAAATGCTATGGTAAGGGACTCTCCCACGCATTATGGGTGGAGAACTATGTGCGATGGAGATGGAATCTCCATCTTTGGAGGAAGCCACATTTGGGTGGACCATGTCTCCTTGTCCAACTGTGCTGACGGTCTCATTGACGCCATCATGGGATCCACTGCCATTACCGTTTCAAACAGCTATTTCACTCACCACAATGAGGTGATGTTGTTGGGTCACAGTGATAGCTATACTCCCGATGTCAACATGCAGGTCACGATTGCATTTAATCATTTTGGGGAAGGTCTTAGGCAGAGAATGCCCAGGTGCAGGCATGGATACTTCCATGTGGTAAACAATGACTACACTCACTGGGAAATGTACGCAATTGGGGGCAGTGCAAACCCGACAATCAACAGTCAAGGCAATAGATTCTCGGCACCTGCAGACCCCTTTGCCAAAGAGGTAACAAAGAGGGAAGACAACAATGAGAATGAATGGAGACAGTGGAACTGGAGATCGGAAGGAGATATGCTGCTGAACGGTGCAT

Fln Alignment:

biogeco2_mira_rep_c18575___IGFGRNAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITVSNSYFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPADPFAKEVTKXXXXXXXXXXXXXXRSEGDMLLNGA
B8LQ36__________________IGFGRDALGGKHGSFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQGNAMVRDSPTHYEWRTS-DGDGISIFGGSHVWVDHVSLSNCADGLIDATMGSTAITISNSYFTHHNEVMLLGHSDSHTSDVKMRVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
575		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain