SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18649

Length: 990 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18649 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8115	15/17
SustainPine v2.0	sp_v2.0_unigene20805	2/17

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal membrane protein 11D [Arabidopsis thaliana] ref\|NP_850441.1\| peroxisomal membrane protein 11D [Arabidopsis thaliana] ref\|NP_001031544.1\| peroxisomal membrane protein 11D [Arabidopsis thaliana] sp\|O80845.2\|PX11D_ARATH RecName: Full=Peroxisomal	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	peroxisomal biogenesis factor 11 family protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	peroxisome fission	GO:0016559	Biological Process	84%
Blast2go	identical protein binding	GO:0042802	Molecular Function	84%
Blast2go	integral to peroxisomal membrane	GO:0005779	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Malate dehydrogenase, active site	IPR001252	-	0.0	-
Sma3	Peroxisomal biogenesis factor 11	IPR008733	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKE7

Fln msg:

Fln protein: MTTLEASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNELHALLTPAPKTTPLPLILLGKSKNALVGTFLLLDQIVWAGRTGIYKNKERADLIGRISLFCFLGGNVCSTLIETSELCRLSMSIKKLEKELKQIKNTSTVDQANLEEQRRLKLKQSNARLLSLAKASVDIVVAVGLLQLAPKKVTPRITGGFGFITSLISLYQLLPPAAKAKAS*

Protein Length: 244

Fln nts: ATGGGGGCCTGACACACAAAGGAGCCGAGCTGCCCATTCGAGCACTGCAACTAATCTGAGCTGCTTAGGTGATTGGACCATCCTTTATCGACACCTGCATACTCGCTGTCGGTGGTCTTGCGGGTTTTATTCGTATTACGCGTAACGCGTTACGGGCAATAGAGGTCATATTTTGGTTTGCAACTCTAATCTAGTGTGAGACAACAATC_-_ATGACTACTCTAGAGGCATCCAGAGCAGAACTTGCATTCTTAGTGTTATACTTGAGCAAAGCGGAAACCAGAGACAAGATTTGTAGAGCTATTCAATATGGTTCTAAGTTTCTCAGTAATGGTGAGCCTGGTACGGCACAAAATGTTGACAAGTCAACAAGCTTGGCACGGAAAGTTTTTCGGCTTTTTAAGTATGTTAATGAGTTGCATGCTCTCCTTACTCCAGCTCCAAAGACAACTCCCCTTCCTCTTATACTTCTTGGGAAATCAAAGAATGCTTTAGTGGGAACATTTTTGTTACTGGATCAAATTGTCTGGGCTGGTAGAACTGGTATCTACAAGAACAAAGAGCGAGCAGATTTGATTGGGAGGATATCACTCTTTTGCTTCCTTGGTGGAAATGTCTGTAGTACGTTGATAGAGACATCAGAGCTGTGCCGTCTTTCAATGTCTATCAAAAAATTGGAGAAAGAGCTGAAACAAATAAAGAATACATCCACAGTTGATCAAGCTAATCTGGAGGAGCAGAGGCGCCTCAAGCTTAAACAGTCAAATGCTAGGCTATTAAGTCTGGCAAAAGCATCTGTGGACATTGTAGTTGCAGTTGGACTACTTCAGTTGGCACCTAAGAAGGTCACGCCACGAATTACCGGGGGCTTCGGATTTATCACCTCTCTCATCTCTCTCTATCAGTTGCTTCCTCCTGCAGCAAAGGCAAAGGCCTCCTAA___AAGAAGGCAATGTTTATCTGTTGTCTGGCTTCGGATAAATCCAACTTTCTTC

Fln Alignment:

biogeco2_mira_rep_c18335___MTTLEASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNEXXXXXXXXXXXXXXXXXXLGKSKNALVGTFLLLDQIVWAGRTGIYKNKERADLIGRISLFCFLGGNVCSTLIETSELCRLSMSXXXXXXXXXXXKNTSTVDQANLEEQRRLKLKQSNARLLSLAKASVDIVVAVGLLQLAPKKVTPRITGGFGFITSLISLYQLLP
A9NKE7__________________MTTLDASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNELHALLTPPPKTTPLPLILLGKSKNALLGTFLALDQIVWAGRTGIYKNKERADLIGRISLFCFLGANICSTLIETSELGRLSISIKKLEKELKKIKNTSTVDQAKLEEQHRLKLKQSNDRLLGLAKASVDIVVAIGLLQLAPKKVTPRVTGGLGFITSLISLYQLLP

SNPs (tot: 3)

Position	A %	C %	T %	Probability
495	50		25	0.995536
639		25	75	0.996473
712		16	83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain