SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18648

Length: 797 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18648 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23696	4/23
SustainPine v2.0	sp_v2.0_unigene23811	16/23
SustainPine v2.0	sp_v2.0_unigene81348	1/23

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: copia protein-like n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE983F	-	-	3.0e-16	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	retrovirus-related pol polyprotein from transposon tnt 1-94	-	-	8.00096e-19	46%

Full-Lengther Next Prediction

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
227		75		25	0.996473
242		75	25		0.996473
246	75		25		0.996473
256			75	25	0.996473
266		75		25	0.996473
270		75	25		0.996473
287		75		25	0.996473
305		62		37	1.0
323		87		12	0.992554
328	11		88		0.991528
333		11		88	0.991528
334		88		11	0.991528
344		88		11	0.991528
365		72		27	1.0
375		90		10	0.90298
382		20	80		0.999996
386		10		90	0.90298
401		88		11	0.991528
408	12		87		0.992554
432	12	75	12		0.975346
440	87		12		0.992554
442		85		14	0.993533
444	12			87	0.992554
449		75		12	0.975346
461		28		57	1.0
462		14		85	0.993533
464	14			71	0.984337
467	16			83	0.994513
473		87		12	0.992554
474			12	87	0.992556
475		87		12	0.992555
476	87		12		0.992554
478		87		12	0.992554
479		87	12		0.992554
484	12		87		0.992554
489	12		87		0.992554
499	12		87		0.992556
511	14		85		0.993537
512	16		83		0.994512
516		87		12	0.992554
521		50		50	1.0
522	40		60		1.0
532		88		11	0.923564
553		88	11		0.923564
568		83		16	0.994512
586	85	14			0.993533
589	71		28		1.0
590		71		28	1.0
591		28		71	1.0
592	28		71		1.0
595	71		28		1.0
599	42		57		1.0
604		83		16	0.994512
612	50		50		1.0
614	20	80			0.995493
619	20	80			0.995493
626		75		25	0.996473
646	25		75		0.996473
647		75		25	0.996474
650		33		66	0.997453
653	33			66	0.997464
654	66			33	0.997476
655	66		33		0.997476
656	66			33	0.997476
657	66			33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain