SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18647

Length: 1037 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18647 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14556	19/21
SustainPine v2.0	sp_v2.0_unigene21655	2/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heterotrophic ferredoxin 2 [Helianthus annuus]	-	-	8.99634e-43	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	ferredoxin- chloroplast	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Ferredoxin [2Fe-2S], plant	IPR010241	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
560		40		60	1.0
561	20			80	0.995493
600	60		40		1.0
722	83		16		0.994512
805	28	71			1.0
851	80	20			0.995493
852	80	20			0.995493
853	80	20			0.995493
857		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain