SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18638

Length: 1272 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene18638

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19328	12/26
SustainPine v2.0	sp_v2.0_unigene60775	6/26
SustainPine v2.0	sp_v2.0_unigene61068	5/26
SustainPine v2.0	sp_v2.0_unigene61299	2/26

Source	Descriptions	Term	Type	Identity
AutoFact	replication protein A 30kDa [Oryza sativa Japonica Group]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	replication protein a 32 kda subunit	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Replication protein A, subunit RPA32	IPR014646	-	-
Sma3	Replication protein A, C-terminal	IPR014892	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A880

Fln msg:

Fln protein: MFGMQSQSDGGSLFSGGGFMPSQATQVNEGGFSSVRKSGTGTGLLPLTVKQISQATQKLSDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAEVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGATQPNSASPAAKVGSMGPPTGLSNTPSHNQFTSPGPASVGGAKDLNGRVQSIFEEPANLAIEHGVHVDDVVRRLPGFTKKQIMDSIAFLINEGYIYSTIDEDHYKSTNG*

Protein Length: 287

Fln nts: ATGGGGACCCCAAATGGAGGGGAAGGAAATTGGCGGGAGTTCTGCTTTCGCGCTCAAATCCCCAATATCAATTAAGATTCGGCAGTGGCAAGCCACTATTATCATCTGAAAGACATTTCATATCAGTTGTTTCTGTTATTATTTGGGATTGTAAATTTCTTCTGTCTCCGCGGGGAGTGACAGAGTAGAGATTAAAG_-_ATGTTTGGCATGCAAAGTCAATCGGACGGAGGCTCTCTATTCTCCGGAGGCGGCTTTATGCCCTCTCAGGCCACCCAAGTTAACGAAGGTGGTTTTTCGTCTGTCAGGAAAAGCGGTACCGGCACCGGGCTTCTTCCATTGACAGTAAAACAGATAAGCCAGGCAACCCAGAAGCTCTCGGATGAGAATTCGAATTTTACAATAGATGGCGTGGATGTCAACAATGTCACCCTTGTTGGGATGGTTTTCAACAAGGAAGAGAGGGTTACTGATGTGTCGTTTTATCTCGATGACGGTACAGGGAGATTAGAAGTGAAACGATGGGTTAATGACACAATGGAATCTGCTGAGATGGCTGAAGTGCACAATGGTGCATATGTTTGTGTCCATGGGCATTTAAGGAGCTTTCAGAACAAGAAACTTGTCAATGCTTTCTCTGTAAGGCCTGTAACTGATTTTAATGAAGTCACGTTTCACTCCTTGGAATGCATTTTTGTGCATCTCTATAATATGAAAGTTCAGGTTGGTGCCACTCAGCCCAACTCAGCAAGTCCAGCTGCTAAGGTTGGATCAATGGGACCACCAACTGGATTGAGTAACACTCCTAGCCATAATCAATTCACGAGTCCCGGTCCTGCCTCTGTGGGTGGCGCTAAAGACTTGAATGGGAGGGTTCAAAGCATATTTGAGGAACCTGCGAATCTAGCAATAGAGCATGGTGTTCATGTAGATGATGTCGTGAGGAGATTGCCTGGTTTCACAAAGAAGCAAATCATGGACTCTATCGCGTTCTTGATAAATGAAGGATACATCTACTCAACTATTGACGAGGACCACTACAAGTCAACTAATGGCTAA___TACAATAATCATACCACTGCTTCTGTGATCTATGAGTTTGATATACAAGTCAACTAATGGCTAATACAATCATAATCATACCACTGCTTCTGTGTTCTATAAGTTTGATATCTACGTTTGGCCTCCAGACTAGGTGTATATTACTTTGAAACCTCTTCCTGTAGTCCTTGAGCTTGTGGCTATTTTTATATTCACTACCCATGTTCATTATTATTAA

Fln Alignment:

biogeco2_mira_rep_c18203___MFGMQXXXXXXXXXXXXXXXXXQATQVNEGGFSSVRKSGTGTGLLPLTVKQISQATQKLSDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAEVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGATQPNSASPAAKVGSMGPPTGLSNTPSHNQFTSPGPASVGGAKDLNGRVQSIFEEPANLAIEHGVHVDDVVRRLPGFTKKQIMDSIAFLINEGYIYSTIDEDHYKSTNG
D5A880__________________MFGMQSQSDGGSLFSGGGFMPSQATQVNEGGFSSVRKSGTATGLLPLTVKQISQATQKPSDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRMEVKRWVNDAMESAEMADVQNGSYVRVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQPNSASPVAK----GPPTPFSNTPSHNQFMSPGPVSVGGAKDLNRMVQSIFEEPANLAIEHGVHVDDVVRRLHGFTKKQIMESIAFLINEGYIYSTIDEDHYKSTNG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
391	33		66		0.997452
409		66		33	0.997452
565	16	83			0.999991
666		15		84	0.999986
694	10			90	0.90298
712			77	22	0.999999
723			37	62	1.0
809		66		33	1.0
811		33		66	1.0
823		33	66		1.0
825	33		66		1.0
829		66		33	1.0
850	33	66			1.0
860	14			85	0.993533
863	83		16		0.994516
864	83		16		0.994516
930	75		25		0.996474
977	25		75		0.996473
989	50		50		1.0
1007	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain