SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18635

Length: 521 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18635 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15535	29/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Brain protein 44-like n=12 Tax=Poaceae RepID=Q6H4I2_ORYSJ	-	-	2.8026e-45	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	brain protein 44-like protein	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0041	IPR005336	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
449		11		88	0.999937
468		13	80		0.999961
471	9	9	54		1.0
472		27	63	9	1.0
473	10	20	70		0.999998
474		20	70	10	0.999998
475	22		77		0.999999
478		14	85		0.993533
481		14		85	0.993533
482	14			85	0.993533
486		33		66	1.0
487		33		66	1.0
488	33	66			1.0
493		50		50	1.0
494		50		50	1.0
495		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain