SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18628

Length: 1113 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18628 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18467	8/32
SustainPine v2.0	sp_v2.0_unigene61657	24/32

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00010, HLH, Helix-loop-helix DNA-binding domain	-	-	2.0e-09	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	transcription factor bhlh35	-	-	2.53127e-16	76%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPT7

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 214 - 252

Fln protein: MELADERSILRYKKPKLSKNVVSERRRRQKMNQLLYTLRALVPNISKMDKASILADAIEYVEKLKQQVERAESDVQSTNVSALSADPRVEETDFLAVSLDAANRYGSDRKYHVQVEVRVEESIVEVRIRCKQEHGILFHLTRALETLPFQLKNFTFSTLNEYLLLLNVVLQADHGFPAMSDYGLKQSIEDSFGKQGLILTSGNSNGHLWQELK*

Protein Length: 215

Fln nts: ATGGGGGAATTTTCTCGCACAGCGTTTGGGGAAAGTCGAACATAGAAATCTTCTGTGCATTCATAGAATAAATATTCTACAGGCTGCACTGTAATTTAGGCGAGAAATCGAATAAAATATACATTTGTTTGTTTACG_-_ATGGAGTTGGCAGATGAGCGTTCCATCCTCCGTTATAAGAAACCCAAGCTCTCCAAGAATGTCGTTTCCGAGCGCCGCCGACGGCAGAAAATGAACCAGCTTCTCTACACACTGCGGGCTTTGGTTCCCAATATTTCCAAGATGGACAAGGCATCGATTTTAGCGGACGCCATCGAATATGTGGAGAAGCTGAAGCAACAGGTGGAGAGAGCTGAGTCTGACGTTCAATCCACCAACGTCTCGGCCCTTTCGGCAGATCCCCGGGTTGAGGAAACCGATTTTTTAGCAGTGAGTTTAGACGCTGCCAACAGATATGGATCCGATCGCAAGTACCATGTCCAGGTTGAGGTCCGCGTGGAAGAAAGCATTGTGGAGGTTCGAATCCGGTGCAAGCAGGAACACGGAATTCTTTTCCATCTTACTCGGGCTCTGGAAACGCTCCCTTTTCAGCTCAAAAACTTCACCTTCAGCACTTTGAACGAATACCTTCTTCTCCTCAACGTTGTGTTGCAGGCCGATCACGGTTTCCCTGCTATGAGCGATTACGGACTGAAGCAATCAATTGAGGACAGTTTTGGGAAGCAGGGCCTCATTCTCACTTCAGGAAATTCCAACGGCCATTTGTGGCAGGAGTTGAAATAAACAACCCTAATACTGGATACTTCAAAATTCACTGGTTACAGCTGGCTGGGACCTCTCTTATCGTATCAGCCAATAACCTGGTAAGATCCAATTTTACAGGGAAACTGAGCACAAATTCTGACATTATACTATTATATGATTCTGGTCTGTAACTGAGCACGGTTTCCAACATTATATAATTAATAATTTTGGTTTTCGGTATTGAGGTATGTGGATTTATGGAAGCTTTAATTAGGAAGGTTAAGAAGAGCTATGGTGCGCACGACAGGCACTTGAATGCTTCCATGTATTTGTGATCTCTTTTTAATGAAATGGTTTTCACGTATTTATGATC

Fln Alignment:

biogeco2_mira_rep_c18128___SKNVVSERRRRQKMNQLLYTLRALVPNISKMDKASILADAIEYVEKLKQQVERAESDVQSTNVSALSADPRVEETDFLAVSLDAANRYGSDRKYH--------------XXXXXXXXXXXXXXXXRCKQEHGILFHLTRALETLPFQLKN
B8LPT7__________________SKNMHSERKRRKKLNDALYTLRSVVPKISKMDKQSIIGDAISHVLDLQTKIQEIQGEIEGLCSSNKGEDHTQISPDMMKPNLEKRFTESGDAKKSVDNFKHGKVLEGKIVEICNAGKDGIYHVRIECKKDVGVLVDLTRALESFPLEIVN

SNPs (tot: 3)

Position	C %	G %	T %	Probability
781	25		75	0.996473
1103	33	66		0.997454
1105	33	66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain