SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18606

Length: 1185 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene18606

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13894	1/60
SustainPine v2.0	sp_v2.0_unigene15590	59/60

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	anthocyanidin reductase	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT5

Fln msg:

Fln protein: MTTTVGNGREYKETTVCVTGATGFLASSLVKRLLDKGYTVHATVRDPGNEVKVRPLLDISGAAERLKLFKADLSEDGSFDAAVAGCQGVFHLATPIDFAPKDPENDVIKPAINGTLNVLKSCTKAQTVKRVVVTSSAATVSINESTEQNQQLDESSWTDLDFLQTKKPPTWSYAVSKTLAEQAALQYGKEQGLDVVTIVPVLLVGPSILPDVPSSVHLALSLLTGNPHLLQAIKGMQLLSGCVSMVHVDDVCSAHIFLMDNPSATGRYICCPINTSVPQLADYLSKRYPQYNVPTEFEGVPQTQKLNMSSKKLVESGFSFKFGIDEIYDDAVESAKAKGLLA*

Protein Length: 344

Fln nts: ATGGGGAGCGTCTAGTTATCTCTCGTCTTTTCCAGTCGCTTAATCTTCAAGCCGCTCCAGGTGTCAACGCGAAA_-_ATGACAACAACCGTTGGCAATGGCAGAGAGTATAAGGAAACCACCGTCTGCGTGACGGGAGCAACAGGCTTTCTGGCTTCATCGCTCGTCAAACGTTTACTCGACAAAGGTTACACTGTCCACGCAACGGTGCGCGACCCAGGGAACGAAGTGAAGGTGCGCCCTCTGCTGGACATTTCTGGAGCTGCAGAGAGGCTCAAGCTCTTTAAAGCGGATCTGTCGGAAGACGGCAGTTTCGACGCCGCCGTTGCCGGCTGCCAGGGCGTTTTTCATCTCGCCACTCCGATCGATTTCGCACCCAAAGATCCCGAGAATGATGTGATCAAGCCAGCGATCAACGGAACCCTTAATGTTCTGAAGTCTTGCACGAAGGCCCAAACCGTGAAACGCGTGGTGGTCACATCGTCCGCGGCCACGGTTTCCATAAACGAATCAACGGAGCAGAATCAGCAGCTCGACGAATCCAGCTGGACAGACCTCGATTTCCTCCAAACTAAAAAGCCCCCCACCTGGTCATATGCAGTTTCCAAGACGCTGGCAGAGCAAGCAGCGCTGCAATACGGTAAAGAACAGGGGCTGGATGTCGTCACCATCGTCCCAGTGTTGCTGGTGGGCCCCTCCATCCTTCCCGACGTGCCGTCCAGCGTCCACCTGGCGCTCTCACTGCTTACTGGCAATCCCCACCTGTTGCAGGCTATTAAGGGCATGCAGTTGTTGTCCGGCTGCGTATCAATGGTACACGTGGACGACGTCTGTAGTGCACATATTTTCTTGATGGACAACCCCTCTGCAACGGGTCGCTACATCTGCTGTCCCATCAACACCTCCGTCCCACAGCTGGCAGACTACTTATCCAAACGCTATCCGCAGTACAATGTCCCGACTGAGTTCGAGGGTGTGCCACAAACCCAGAAGTTGAACATGTCGTCGAAGAAATTGGTGGAGAGTGGTTTCTCCTTCAAATTTGGCATCGACGAAATCTACGATGACGCTGTAGAATCCGCGAAGGCGAAGGGATTGCTGGCTTAA___CTACTCTACGAATAACAAAACAGAGCTGTTTTCTTCCCATGGAAATAATACCACGCACTGTGTGTTTGGTGGTATTCGTAGT

Fln Alignment:

biogeco2_mira_rep_c17928___MTTTVGNGREYKETTVCVTGATGFLASSLVKRLLDKGYTVHATVRDPGNEVKVRPLLDISGAAERLKLFKADLSEDGSFDAAVAGCQGVFHLATPIDFAPKDPENDVIKPAINGTLNVLKSCTKAQTVKRXXXXXXXXXXXINESTEQNQQLDESSWTDLDFLQTKKPPTWSYAVSKTLAEQAALQYGKEQGLDVVTIVPVLLVGPSILPDVPSSVHLALSLLTGNPHLLQAIKGMQLLSGCVSMVHVDDVCSAHIFLMDNPSATGRYICCPINTSVPQLADYLSKRYPQYNVPTEFEGVPQTQKLNMSSKKLVESGFSFKFGIDEIYDDAVE
B8LRT5__________________MAETIVNGQDCKGTTVCVTGASGFMASWLVKRLLQKGYTVHATVRDPENEAKVRHLLDISGAAERLKLFRAELSEDGSYDAAVAGCHGVFHVATPIDFEPKDPENDVIKPAINGTLNVLKSCTKSKTVKRVVVTSSAATVSINESAEQNQYIDESCWTDVDFLQTKKPPTWSYPVSKTLAEQAALQYGKEQGLDVVTIIPVLVVGPSITPSVPSSVQLALSFLTGNPHTLQAIKGMQLVSGSVSLVHVDDVCSAHIFLMENPSAEGRHICCPINTSVPQLAKYLSKRYPQYNVPTQFEDVPQTAKVNISSKKLVESGFSFKFGIDEIYDDAVE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
679	11		88		0.991528
682			11	88	0.991528
683			11	88	0.991528
804		30	69		1.0
1089		88		11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain