SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18605

Length: 1147 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18605 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15486	29/59
SustainPine v2.0	sp_v2.0_unigene61501	30/59

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	2.0e-06	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	harpin-induced protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ42

Fln msg:

Fln protein: MSGKGCVTRHDCGRHGKGCGTHHGCGHDGSGSGYRKFFQVLLALLLILLFVFLIIYLALRPHKPRFYLQNATVRALNLSGGFLTSSLQFTVVSHNPNDRVAVLYDRLSTYASYLGQQITDQCPLPPFYQDHHDVNFLNPILYGNEVPLATVVCQHLNYERQNGLVSLSLRMDGRIRWKVGSWTSGNYHLNVNCWAILGMSDYSIGGQVPLQPGTKCRVEI*

Protein Length: 222

Fln nts: GGGGGTCGGATCCTCTTCTGTAAGCGCTCTGAAGCTTCTCGTACCCTCTGTTCAATCCGTCCTTTAAGACTCTGTCTTTCCTGAGTTTCCTCAAACTCAATCTTCTTGTTTTGGGATTGAGGCCAAACGTCAGAAGTAGCATTAGAGCTCTGAGCATTACAGTACTATTCTTGGTATTTTCTGCTGATATTTGCGGTCAGAATTTTGTATTAGAGAGATCCAGCC_-_ATGTCAGGCAAGGGATGTGTGACTCGCCACGATTGCGGCCGCCATGGGAAGGGATGTGGGACTCACCACGGTTGCGGCCATGATGGCTCCGGTTCCGGCTACAGGAAATTCTTTCAGGTTCTGTTGGCGTTGCTCTTGATCCTGCTCTTCGTGTTCCTCATCATCTACTTGGCGTTGCGTCCCCACAAGCCACGGTTCTACCTGCAGAATGCTACGGTCCGCGCGCTGAATCTGAGTGGCGGATTCCTCACTTCCAGCCTGCAGTTCACCGTGGTGTCGCACAACCCGAATGACAGGGTCGCTGTCCTCTACGACAGGCTGAGCACCTACGCCTCGTATCTGGGTCAGCAGATCACGGACCAGTGCCCGTTGCCCCCTTTCTACCAGGACCACCACGATGTCAACTTCTTGAATCCCATTTTATACGGGAATGAGGTTCCCTTGGCCACCGTTGTCTGTCAGCATCTGAATTACGAGAGGCAGAACGGGTTGGTGAGCTTGAGTCTGAGAATGGATGGGAGGATCCGCTGGAAGGTGGGTAGCTGGACATCTGGGAATTATCATTTGAATGTCAATTGCTGGGCCATCTTGGGGATGAGCGATTACAGCATAGGAGGCCAAGTTCCTCTGCAGCCGGGCACCAAATGCCGCGTGGAGATCTGA___ATTTGAGTTTTATAAGATATCAGAATTTCATTTCATGTAGTTACTCTGTTTCTACTTTTATTTCAATAATTTGAGGAATCCCTTACCTTCCAGGCAGATTTTTATCTGCATGCTCTATTGTTTTCTAATAGTGCTCTGGATATGGTGCGAGGGATTGTCATCATAATACCGAGCCCTTAAATTCGGTATATGAATTCATTACTATTATAACACCACCTTGTCAGTGTAGTGTATCATTCATCGTTACTTTTGTATATTC

Fln Alignment:

biogeco2_mira_rep_c17925___MSGKGCVTRHDXXXXXXXXXXXXXXXXXXXXXGYRKFFQXXXXXXXXXXXXXXXXXXXLRPHKPRFYLQNATVRALNLSGGFLTSSLQFTVVSHNPNDRVAVLYDRLSTYASYLGQQITDQCPLPPFYQDHHDVNFLNPILYGNEVPLATVVCQHLNYERQNGLVSLSLRMDGRIRWKVGSWTSGNYHLNVNCWAILGMSDYSIGGQVPLQPGTKCRVEI
A9NQ42__________________MSGKGCVTRNDCGRHGSYCEEWR----------FRRFLQVLLAFLLIVLFVILVIFLALHPHKPRFYLQNATVRELNVSDGLLTSSLQFTVLSHNPNDRIGVLYDSLSIYASYLGQQITDEYRLPHFYQDDNDFNVLNPVLCGNSVPLAAVVCEHLNSERQNGLLSLSLRMDGRIRWKVGTWTSGHYHLNVNCWTISGMGNNDFGGQVPIQQDTRCHVEV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
555		25	75		0.996473
556		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain