SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18604

Length: 1623 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene18604

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18592	22/32
SustainPine v2.0	sp_v2.0_unigene30709	10/32

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 7 homolog A n=26 Tax=Embryophyta RepID=PRS7A_ARATH	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	regulatory particle triple-a 1a	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	97%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	97%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRI8

Fln msg:

Fln protein: MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTAIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN*

Protein Length: 427

Fln nts: ATGGGGGAAACAAAAGCGAGGGTCTTTGTAAGAAGGAAGAGAACAGACAACC_-_ATGGCACCTGATCCAGAAGAAGACTTGAAGGAATCCAACCCCAGACCTCTTGACGAGGATGACATAGCTTTGCTTAAGACCTATGGTTTAGGACCTTATTCGACCGCCATAAAGAAAGCAGAGAAGGAAATCAAAGAAATGGCAAAGAAGGTTAATGATCTTTGCGGGATAAAAGAATCAGATACTGGCTTGGCTGCTCCCAGTCAATGGGATCTTGTTTCTGACAAGCAGATGATGCAAGAGGAGCAGCCTCTGCAGGTTGCACGGTGCACTAAAATCATTAATCCAAACACTGACGATGCCAAGTATGTTATAAATGTTAAACAAATTGCTAAGTTTGTTGTTGGATTAGGTGATAAGGTCTCCCCAACTGACATTGAAGAGGGGATGCGAGTCGGAGTTGATCGCAATAAGTATCATATTCAGATCCCTCTACCTCCTAAGATTGATCCCAGTGTGACAATGATGACTGTTGAAGAAAAGCCAGATGTTACCTACAATGATGTTGGTGGTTGCAAAGAACAAATTGAAAAGATGAGAGAGGTTGTGGAGCTTCCAATGCTTCATCCTGAGAAATTTGTTAAGCTTGGAATAGATCCTCCGAAAGGTGTCCTTTGCTATGGTCCTCCTGGCACAGGAAAAACACTATTAGCTCGAGCAGTGGCTAATCGTACTGATGCATGCTTTATTAGAGTTATTGGAAGTGAGCTTGTTCAGAAGTATGTTGGTGAGGGTGCTCGAATGGTACGGGAGCTTTTTCAGATGGCCCGGTCAAAGAAAGCCTGTATTGTCTTTTTTGATGAAGTGGATGCCATAGGTGGTGCTCGCTTTGATGATGGTTTAGGCGGTGATAATGAAGTACAGAGAACTATGCTTGAAATAGTGAACCAGTTGGATGGTTTTGATGCTCGTGGAAACATCAAAGTTCTAATGGCTACAAACAGGCCTGACACTCTTGATCCTGCATTATTACGGCCTGGTCGGTTGGACAGAAAGGTTGAATTTGGCTTACCGGATTTGGAAAGCAGGACTCAGATTTTTAAGATTCATACACGTACCATGAATTGTGAGCGAGACATTCGTTTTGAGCTGCTTTCCCGGTTATGCCCCAATTCTACAGGTGCTGACATTCGGAGTGTCTGCACTGAGGCTGGCATGTATGCTATTCGAGCACGTAGAAAGACTGTTACCGAGAAAGACTTTCTTGAAGCTGTGAATAAAGTCATTAAAGGATATCAAAAGTTTAGTGCGACACCCAAATACATGGTTTACAACTAA___AATTTTGCTCCAGTATTTGATGTCTTATGTTTGATGGTGGAGCATGGCCATTCAACATCCTTACCATCTATGTTTAACTTGGTTGCTGTCGTAAGTTTCTGTAAATGGACTTGCATATTCATTATCAATTTATTGGGACCATACCAATCATACGGAGGCCAAAATTACAAAGCTTTTTTGATCATTGATTGGGATTCAATTTCCATCATGATGGATATTTCGTGGATCATTGAAAATTATCTTGGCAGAAATGATTTTATTATGCTATTGGCACATACTATGTCTTTTACTTT

Fln Alignment:

biogeco2_mira_rep_c17924___MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTXXXXXXXXXXXXXXXVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN
B8LRI8__________________MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1027		20		80	0.995493
1054		83		16	0.994512
1055	83		16		0.994512
1057	16		16		0.988813
1134			10	90	0.90298
1349	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain