SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18601

Length: 1291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18601 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15588	30/37
SustainPine v2.0	sp_v2.0_unigene24044	7/37

Source	Descriptions	Term	Type	Identity
AutoFact	Flavanone 3-hydroxylase n=1 Tax=Ginkgo biloba RepID=Q5XPX2_GINBI	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	flavanone 3-hydroxylase	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ5

Fln msg:

Fln protein: MAPTAVVNDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERGRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKKGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTKACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQSEISK*

Protein Length: 364

Fln nts: ATGGGGACGCCTTTAAATCTAAAGCAGCTCGCCATTCTTTAGATCACCGGGTGTCTCTGAGTAGAGTAAGCCCTCTTTCTTTCTGCGTGACTAGTGATCTGATACTAAACA_-_ATGGCGCCCACAGCAGTGGTTAACGATCGCCCCGATTTCCTTGTAACGGCGGAGACGCCGAAGTCCCTGCAGTCCATTTTTATCCGAGACGAGGACGAGCGCCCCAAGGTGGCTTACAATCAATTCAGCAAAGACATTCCCGTCATTTCCCTCTCTGGTATCGCCGGGGAAGAGAGGGGCCGCGTGAGAGACGAAGTGAGCAAGGCCTGTTCTGAATGGGGAATTTTCCAGGTGGTTGATCATGGTGTTCCCCAGGAGCTCGTGGAGACCATGACTCAGCTTTCCAGGGCTTTCTTTGCCCTCCCTGCAGAGGAGAAGCTCAAATACGACATGAGAGGTGGAAAGAAGGGAGGCTTTGTGGTGAGCAGCCATCTGCAGGGCGAAGCCGTTCTCGACTGGAGAGAAATCTGCACTTACTTCTCTTATCCCCTTCACCAGCGTGATTACACGAGGTGGCCTGTCAAGCCCGATGGCTGGAGGGAGGTTGTGGAGAAATACAGCGAATCCCTGATGGGTTTGGCATGCAAACTGTTGGGGATAATATCAGAGGCATTGGGATTGGAAACTGAAGCAGTGACCAAGGCTTGTGTGGAGATGGACCAGAAAGTGGTGATAAACTTCTATCCCAAATGCCCACAACCAGACATGACATTGGGGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGCCTACAAGCTACCAAGGACGACGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCTTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCCGTGGTGAATTCGAACAGCAGCAGGCTGTCTATTGCGACGTTTCAGAATCCAGCGCAGGAAGCCATCGTGTACCCGTTGGATGGAGTTGTGAAGGAGGCGGAAGGCGAGAAGTGTTTCATGGAAGAGCCCATCACTTTTGCACAGATGTACACCAGAAAGATGAGCCGAGACATCGAGCTCGCCCGCCAGAAAAAGTTGGCCAAAGTCGCTGAGAAGGAACAATCAGAGATTTCCAAGTGA___TGTGAAGATCAATTAAAGAAAAATGCATCGATGTAGATTTTGTGTGTGTCTGCCTGGATGATGGATGATGTCTGGGTTCTCGGAGATCTTA

Fln Alignment:

biogeco2_mira_rep_c17898___MAPTAVV-NDRPDFLVTAETPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERGRVRDEVSKACSEWGIFQVVDHGVPQELVETMTQLSRAFFALPAEEKLKYDMRGGKKGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTKACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKLAKVAEKEQS
A9NYQ5__________________MAPTAVVASDRPDFLVTAEVPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIEGAERGRVIDEVSKACSEWGIFQVVDHGVPKELVDSMTRLSRDFFALPAEEKLKYDMRGGKRGGFVVSSHLQGESVLDWREICTYFSYPLHQRDYSRWPVKPDGWREIVEKYSEALMGLACNMLAIVSEALGLESDAVTKACVEMDQKVVVNFYPKCPEPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKSADHQAVVNSNSSRLSIATFQNPAQEGIVYPLDGVVKEAEGEKCFMEEPITFTQMYTRKMSRDIELARQKKMAKVAEQEKS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
829	90	10			0.90298
833	90			10	0.90298
894	75		12		0.975346
1063		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain