SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18599

Length: 982 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18599 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23392	64/65

Source	Descriptions	Term	Type	Identity
AutoFact	Selenoprotein, Rdx type [Arabidopsis thaliana] gb\|AED97080.1\| Selenoprotein, Rdx type [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	like protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Selenoprotein, Rdx type	IPR011893	-	0.0	-
Sma3	Selenoprotein T	IPR019389	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLA1

Fln msg:

Fln protein: MGTAEGRAEHCEGKMEKVQLLITGLCAFLFISDILNAFNPPTGKPHHHHHHVHHVHSEDSIPIPKEVLKHTDFKPHESLDGGGAGIGAGIGAGAVVQISFCTSCSYRGMALTMKKMLESAFPGVDVELSNYPPPLPKRILSKFVPVLQIGSIVLITAGDHIFPRLGYSAPPPWYYSLKQKRFGVIATTWLLGNALQSFLQGTGAFEVMCNGDLVFSKLRENRFPGEYELRELVGRSLGAKY*

Protein Length: 243

Fln nts: _-_ATGGGCACAGCAGAAGGCAGGGCGGAACACTGTGAAGGAAAAATGGAGAAGGTGCAGCTGTTGATAACGGGACTTTGTGCGTTTCTGTTTATTTCTGATATACTGAATGCATTCAATCCCCCGACCGGTAAGCCCCACCACCATCACCACCATGTTCACCATGTTCACTCGGAGGATTCGATCCCTATACCTAAAGAAGTCCTCAAACATACCGATTTCAAGCCCCATGAATCTCTGGATGGAGGTGGAGCTGGAATTGGAGCTGGAATTGGAGCTGGTGCAGTAGTTCAAATTTCTTTTTGTACATCATGCTCATACAGGGGCATGGCTTTGACTATGAAGAAAATGTTAGAGAGCGCATTTCCTGGAGTTGATGTGGAACTTTCAAATTACCCCCCACCATTGCCAAAGCGCATTCTCAGCAAGTTTGTGCCAGTGTTACAGATAGGCAGCATTGTGCTTATTACTGCAGGGGATCACATTTTTCCTAGACTGGGATACTCAGCACCTCCTCCTTGGTACTACTCTCTGAAACAGAAACGCTTTGGAGTTATTGCAACTACCTGGCTTCTTGGAAATGCATTGCAGTCGTTTCTTCAAGGCACAGGGGCTTTTGAAGTAATGTGTAATGGTGATCTTGTGTTTTCTAAGCTAAGAGAGAATAGGTTTCCAGGTGAATATGAATTGAGGGAACTTGTTGGCAGGTCGTTGGGAGCAAAATATTAG___CCTGCTCTAACTCTGCATTTGCTTTAGAGATGACTGATATAGATGAAAATGTCGTGAATCTTATAAAGCACGTTGGTTCATTGTAACTATTCCCACACATTATTCTTTCTTTCACTAGTTGCAAAAAGACATTCTTTCTTTGAATTGAATGTCTCACTTTCTGTGGTATGCAAACCTTAAGTGTTGCTTACAGATTAATGCACCTATTGAAGACATGAAAGTGAATTGTAAGGGAATATCTGCAGTAGTATGAAGG

Fln Alignment:

biogeco2_mira_rep_c17866___MEKVQLLITGLCAFLFISDILNAFNPPTGKPXXXXXXXXXXHSEDSIPIPKEVLKHTDFKPHESLDXXXXXXXXXXXXXA--VVQISFCTSCSYRGMALTMKKMLESAFPGVDVELSNYPPPLPKRILSKFVPVLQIGSIVLITAGDHIFPRLGYSAPPPWYYSLKQKRFGVIATTWLLGNALQSFLQGTGAFEVMCNGDLVFSKLRENRFPGEYELRELVGRSLGAKY
A9NLA1__________________MEKVQLLVTGLCAFLFVSDLLNAFNPPPGKPRHHHHHHAH--SQDSIPISKEVLKHTDFKPLESVDGAGAGAGAGAGAGAGAVVHISFCTSCSYRGTALTMKKMLESAFPGVDVVLSNYPPPLPKRMLSKFVPVLQIGSIVLITAGDHIFPRLGYTAPPPWYYSLKQKRFGVIATTWLLGNALQSFLQGTGAFEVECNGDLVFSKLRENRFPGEYELRELVGRSLGTKY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
560	80		20		0.995493
844			85	14	1.0
867	6		18	75	1.0
974		25	75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain