SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18589

Length: 654 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene18589 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17853	97/98

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	heat shock protein 83-like	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
299		3		96	0.988113
421	2			85	1.0
428		4		95	0.994598
430	4			95	0.995055
503	6		93		0.999264
511	92	7			0.999602
512		7		92	0.999602
558	87	12			0.999964
561		87		12	0.999964
589	88			11	0.923564
597		14		85	0.993533
598		16		83	0.994512
626	66	33			0.997452
627		33	66		0.997452
629	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
632	643	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain