SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18561

Length: 506 nt

UniGene Fasta

>biog2_v2.0_unigene18561
AGGACAAGTGGAGTCCAGCATTGCAAATTCGAACAGTTTTACTGAGTATACAAGCACTGTTAAGTGCACCAAATCCAGATGACCCTCTTTCTGAAAACATTGCAAAACACTGGAAGACGAATGAAATTGAGGCTGTGGAAACAGCAAAAGAATGGACAAGGCTGTATGCAAGTGGGGCCTGACATTCTACATCGATTCATTCAATAGTACTGTTCTAATGTCCAGGTCTTTGCATGTGTGTTCCAATTGGCGGGCACTGAAATGACGCCGTCTCAAGTCCAGGTGCAGATACCTGAATTTGTTCAGGGAAAAATCTGATTGTTCCAAGGAATCTGTTAATTTAGTGTTATGTTGGGGCTGCAGCCTTTCGATATACATATGGGTTTTTTTCCCATGTATCTTATATGTTTTATGGTACATCTATTAAGGCTCTGATGTGAATTTTGAATTCTTACCTAGACAATCTTACCTTTCACATTTAGTAATATGTCAATATAATATAATTC

Ace file of the UniGene biog2_v2.0_unigene18561

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23607	8/10
SustainPine v2.0	sp_v2.0_unigene37451	2/10

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	98%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	98%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	98%
Blast2go	response to iron ion	GO:0010039	Biological Process	98%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	98%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	98%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNB1

Fln msg: your sequence is shorter than subject: 60 - 153

Fln protein: DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEIEAVETAKEWTRLYASGA*

Protein Length: 61

Fln nts: AGGACAAGTGGAGTCCAGCATTGCAAATTCGAACAGTTTTACTGAGTATACAAGCACTGTTAAGTGCACCAAATCCAGATGACCCTCTTTCTGAAAACATTGCAAAACACTGGAAGACGAATGAAATTGAGGCTGTGGAAACAGCAAAAGAATGGACAAGGCTGTATGCAAGTGGGGCCTGA___CATTCTACATCGATTCATTCAATAGTACTGTTCTAATGTCCAGGTCTTTGCATGTGTGTTCCAATTGGCGGGCACTGAAATGACGCCGTCTCAAGTCCAGGTGCAGATACCTGAATTTGTTCAGGGAAAAATCTGATTGTTCCAAGGAATCTGTTAATTTAGTGTTATGTTGGGGCTGCAGCCTTTCGATATACATATGGGTTTTTTTCCCATGTATCTTATATGTTTTATGGTACATCTATTAAGGCTCTGATGTGAATTTTGAATTCTTACCTAGACAATCTTACCTTTCACATTTAGTAATATGTCAATATAATATAATTC

Fln Alignment:

biogeco2_mira_c17594___DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEIEAVETAKEWTRLYASGA
A9NNB1__________________DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEVEAVETAKEWTRLYASGA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
455		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain