SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18540

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18540
ATGTACCGAGGCATGCAGTATATCAGCTCACGAGAAATCTAGTGGAGGCCAACTCAGAAGCAAAGATGCTCTGCTTGCAAGGGTTTCTCTAGTCCCTCTAACAAGCCTCCTGAATTGGAAGGCAGCTCCATGGATGAAATCTATGATGCATTAGTTCAGCACATTTTCCCAGCAGTAGCTGTGAGTAACTCAAAAGCAAAGTATATTATTGGGTTAGCTGGACCTCCTGGTGCAGGAAAGTCCACTGTAGCAAATGAAGTGGTTTGTCGTTTGAATGCCTTGTGGCATCAAGAGACTCATGGAATGGATAATCAGATAGAGCCAGCCGATGTTGCTGTGGCTGTTCCAATGGATGGATTCCATCTATATCGTTCACAGCTTGATATGATGGAGGACCCGAGGAAGCTTATGCAAGAAGAGGAGCTCCATGGACATTTGATCCAGCACGTC

Ace file of the UniGene biog2_v2.0_unigene18540 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3146	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[H] COG1072 Panthothenate kinase	-	-	4.0e-24	34%
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	62%
Blast2go	phosphoribulokinase uridine kinase	-	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uridine kinase.	EC:2.7.1.48	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		79%
Blast2go	Drug metabolism - other enzymes	00983		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	79%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	79%
Blast2go	Lipopolysaccharide biosynthesis	00540	79%
Blast2go	Nicotinate and nicotinamide metabolism	00760	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	UMP biosynthetic process	GO:0006222	Biological Process	79%
Blast2go	phosphorylation	GO:0016310	Biological Process	79%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	79%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uridine kinase	IPR000764	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S4S4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 123 aas, your sequence is shorter than subject: 150 - 312

Fln protein: MYRGMQYISSREI*WRPTQKQRCSACKGFSSPSNKPPELEGSSMDEIYDALVQHIFPAVAVSNSKAKYIIGLAGPPGAGKSTVANEVVCRLNALWHQETHGMDNQIEPADVAVAVPMDGFHLYRSQLDMMEDPRKLMQEEELHGHLIQHV

Protein Length: 151

Fln nts: ATGTACCGAGGCATGCAGTATATCAGCTCACGAGAAATCTAGTGGAGGCCAACTCAGAAGCAAAGATGCTCTGCTTGCAAGGGTTTCTCTAGTCCCTCTAACAAGCCTCCTGAATTGGAAGGCAGCTCCATGGATGAAATCTATGATGCATTAGTTCAGCACATTTTCCCAGCAGTAGCTGTGAGTAACTCAAAAGCAAAGTATATTATTGGGTTAGCTGGACCTCCTGGTGCAGGAAAGTCCACTGTAGCAAATGAAGTGGTTTGTCGTTTGAATGCCTTGTGGCATCAAGAGACTCATGGAATGGATAATCAGATAGAGCCAGCCGATGTTGCTGTGGCTGTTCCAATGGATGGATTCCATCTATATCGTTCACAGCTTGATATGATGGAGGACCCGAGGAAGCTTATGCAAGAAGAGGAGCTCCATGGACATTTGATCCAGCACGTC

Fln Alignment:

biogeco2_mira_c17566___PELEGSSMDEIYDALVQHIFPAVAV-SNSKAKYIIGLAGPPGAGKSTVANEVVCRLNALWHQETHGMDNQIEPADVAVAVPMDGFHLYRSQLDMMEDP
B9S4S4__________________PVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAGKSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain