SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18524

Length: 530 nt

UniGene Fasta

>biog2_v2.0_unigene18524
TCAAGGAAGTCTCCAATGCAGATGGTGTGACCAAGTTGAAAGTTTTAGGGATTATCTTAGGAGGCCCTGCTCATTCAGCGGGTGTCAAGCAGGGTGATGAGATTTTGTCAGTTAATGGAAAAAGTGTGGAAGGGATGACATCATCTGATGTTGCTTCTCTAATTCAAGGTCCCAAGGAAACATTTGTCTCACTTGAGGTTAAGCATGGGGATTGTGGCGACACCCAAAATGTTATGATTGAACGGCAACAAGTAGTTCGAACTCCAGTTTTTTATCGTTTGGAGAAGGATGAAAATGGAAATGCTGATATGGGCTATATACGGCTCAAAGAGTTCAATGCATTGGCAAGGAGAGATTTAACTACAGCTATGCGACGCCTCAAAGATGCAGGTGCATCTCACTTTGTGTTAGACCTACGAGATAATCCTGGGGGCTTAGTGCAGGCAGGTATTGAGATTGCCAAGCTATTTTGGAAGGGGAGACACTGTATTATATACCATTGGACGAGATCTTGATTCACAGAATAGCAT

Ace file of the UniGene biog2_v2.0_unigene18524

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene426	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	D1 protease-like protein precursor [Triticum aestivum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	carboxyl-terminal-processing protease	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLY0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 88 aas, your sequence is shorter than subject: 171 - 472

Fln protein: KEVSNADGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDTQNVMIERQQVVRTPVFYRLEKDENGNADMGYIRLKEFNALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLFWKGRHCIIYHWTRS*

Protein Length: 172

Fln nts: TCAAGGAAGTCTCCAATGCAGATGGTGTGACCAAGTTGAAAGTTTTAGGGATTATCTTAGGAGGCCCTGCTCATTCAGCGGGTGTCAAGCAGGGTGATGAGATTTTGTCAGTTAATGGAAAAAGTGTGGAAGGGATGACATCATCTGATGTTGCTTCTCTAATTCAAGGTCCCAAGGAAACATTTGTCTCACTTGAGGTTAAGCATGGGGATTGTGGCGACACCCAAAATGTTATGATTGAACGGCAACAAGTAGTTCGAACTCCAGTTTTTTATCGTTTGGAGAAGGATGAAAATGGAAATGCTGATATGGGCTATATACGGCTCAAAGAGTTCAATGCATTGGCAAGGAGAGATTTAACTACAGCTATGCGACGCCTCAAAGATGCAGGTGCATCTCACTTTGTGTTAGACCTACGAGATAATCCTGGGGGCTTAGTGCAGGCAGGTATTGAGATTGCCAAGCTATTTTGGAAGGGGAGACACTGTATTATATACCATTGGACGAGATCTTGATTCACAGAATAGCAT

Fln Alignment:

biogeco2_mira_c17543___KEVSNADGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDTQNVMIERQQVVRTPVFYRLEKDENGNADMGYIRLKEFNALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLF
B8LLY0__________________KEVSDEDGVTKLKVLGIILGGPAHSAGVKQGDEILSVNGKSVEGMTSSDVASLIQGPKETFVSLEVKHGDCGDSQNVIIERQQVIRTPVFYRLEKDENGNEDMGYIRLKEFNALARRDLTTAMRRLKDAGASHFVLDLRDNPGGLVQAGIEIAKLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain