SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18490

Length: 320 nt

UniGene Fasta

>biog2_v2.0_unigene18490
GGTTGGAATTTGAGCAGGAGGAGCTGATAGAGTGTTATTATCGGAACGGATGAAGTATATGCTCAAATGACATTACAGCCCTTAAACGCTCAAGAGCAAAAGGAGTCTTATCTAGCTCCTGATATTGGCACGCAAAGCAGACAGCCAACTAATTACTTCTGTAAAACGCTAACAGCAAGTGACACCAGCACTCATGGTGGATTCTCAATTCCACGCCGTGCTGCTGAGAAAGTGTTTCCACCACTGGATTTCACTCAGCAGCCTCCNGTTCAAGAGCTTGTTGCTAGGGATCTTCATGACAATGAGTGGAAATTTCGGCA

Ace file of the UniGene biog2_v2.0_unigene18490

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30363	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 6/8 n=1 Tax=Ginkgo biloba RepID=E1UHX7_GINBI	-	-	80%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	60%
Blast2go	auxin response factor 6-like	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	flower development	GO:0009908	Biological Process	0.0	85%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 690 aas, your sequence is shorter than subject: 106 - 919

Fln protein: GWNLSRRS**SVIIGTDEVYAQMTLQPLNAQEQKESYLAPDIGTQSRQPTNYFCKTLTASDTSTHGGFSIPRRAAEKVFPPLDFTQQPPVQELVARDLHDNEWKFR

Protein Length: 107

Fln nts: GGTTGGAATTTGAGCAGGAGGAGCTGATAGAGTGTTATTATCGGAACGGATGAAGTATATGCTCAAATGACATTACAGCCCTTAAACGCTCAAGAGCAAAAGGAGTCTTATCTAGCTCCTGATATTGGCACGCAAAGCAGACAGCCAACTAATTACTTCTGTAAAACGCTAACAGCAAGTGACACCAGCACTCATGGTGGATTCTCAATTCCACGCCGTGCTGCTGAGAAAGTGTTTCCACCACTGGATTTCACTCAGCAGCCTCCaGTTCAAGAGCTTGTTGCTAGGGATCTTCATGACAATGAGTGGAAATTTCGGCA

Fln Alignment:

biogeco2_mira_c17503___DEVYAQMTLQPLNAQEQKESYLAPDIGTQSRQPTNYFCKTLTASDTSTHGGFSIPRRAAEKVFPPLDFTQQPPVQELVARDLHDNEWKFR
E1UHY2__________________DEVYAQLTLVP--DSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain