SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18483

Length: 460 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18483
CAGCAGTTGCTACTCACAGCTGGATTTGATAAGAGGTTGAAGTTTTTCCAGATTGACGGGAAAAGGAACCCCAAAATCCAGAGTGTGTTTATTGAGGATCTTCCGATTCACAAGGCTTCGTTTTTGCCCGACGGTTCAATGGCCATTGCTGCAGGACGCAGGAAGTTCTTCTACAGTTTTGATGTGGTGAAAGGTGCGTTGGACAGGATTAATTGTTTGATTGGTAGAGAGGAGAGGAGTTTGGAGAGCTTTGAGGTGTCAACAGATTCCAGCATGATTGCATTCCTTGGGAATGATGGCTATATAATGCTGGTTTCGACAAAGACTAAACAGTTGATTGGGACCTTGAAAATGAACGGAACATCTCGTGCACTTTCCTTTGCTGATGATGGAAGACAGTTGCTGAGTTCAGGGGGAGATGGGCAGGTATATCATTGGGATCTTCGAATGAGGAAATGCA

Ace file of the UniGene biog2_v2.0_unigene18483 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5570	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	u3 small nucleolar rna-associated protein 18 homolog	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMU5

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 153 - 546

Fln protein: QQLLLTAGFDKRLKFFQIDGKRNPKIQSVFIEDLPIHKASFLPDGSMAIAAGRRKFFYSFDVVKGALDRINCLIGREERSLESFEVSTDSSMIAFLGNDGYIMLVSTKTKQLIGTLKMNGTSRALSFADDGRQLLSSGGDGQVYHWDLRMRKC

Protein Length: 154

Fln nts: CAGCAGTTGCTACTCACAGCTGGATTTGATAAGAGGTTGAAGTTTTTCCAGATTGACGGGAAAAGGAACCCCAAAATCCAGAGTGTGTTTATTGAGGATCTTCCGATTCACAAGGCTTCGTTTTTGCCCGACGGTTCAATGGCCATTGCTGCAGGACGCAGGAAGTTCTTCTACAGTTTTGATGTGGTGAAAGGTGCGTTGGACAGGATTAATTGTTTGATTGGTAGAGAGGAGAGGAGTTTGGAGAGCTTTGAGGTGTCAACAGATTCCAGCATGATTGCATTCCTTGGGAATGATGGCTATATAATGCTGGTTTCGACAAAGACTAAACAGTTGATTGGGACCTTGAAAATGAACGGAACATCTCGTGCACTTTCCTTTGCTGATGATGGAAGACAGTTGCTGAGTTCAGGGGGAGATGGGCAGGTATATCATTGGGATCTTCGAATGAGGAAATGCA

Fln Alignment:

biogeco2_mira_c17496___QLLLTAGFDKRLKFFQIDGKRNPKIQSVFIEDLPIHKASFLPDGSMAIAAGRRKFFYSFDVVKGALDRINCLIGREERSLESFEVSTDSSMIAFLGNDGYIMLVSTKTKQLIGTLKMNGTSRALSFADDGRQLLSSGGDGQVYHWDLRMRKC
Q9FMU5__________________QLLLTAGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPNGSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLEYFEVSQDSNTIAFVGNEGYILLVSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain