SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18448

Length: 494 nt

UniGene Fasta

>biog2_v2.0_unigene18448
GAAGATGTTGAGGCTCAGCTTTCAATTGCGAGTGAGAAAGCTTCACAAGCCATGGCACAGCAATCTGCAGTCCAAGAGGAACTGGAATGCACTCGACGTCAAACAGGTGAAGCACTACGGTCCTTAGATGGGGAGAAGCAGCAATTACGCAGTGCTAATAGTAGGCAGAAAGAGATTCTTGAGGAGTTGCGTCGAACTTTGGAAGCTAGGGAGCATGATATAGAAGAATTAAAGCAGTCTCTTTCTGAGAAAGATCAGATGTTGCAAGATACAAAAGTCTCATTAAAAGCCATGGACGAAAAGCGCCAATCTTCCCTCTCTGAACTTGCTACAAAACATCAAAAGATTGTGGAGAGCTTTGAATCTCAGTTGGCTGATGCAACCTTGGAAAGGAGCAAAGCAGCTGAGGCAATATCAAAGCTACAGGAAGAGCTGGCTGACAGAGAATCAAAGCTTGCAGAGTTGGAGGCAGCTTCTACAGGCGAGGCAGTGAG

Ace file of the UniGene biog2_v2.0_unigene18448

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12160	1/2
SustainPine v2.0	sp_v2.0_unigene36776	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin_tail_1 multi-domain protein	-	-	3.0e-09	24%
FL-Next	Isoform 2 of Protein GRIP OS=Arabidopsis thaliana GN=GRIP	-	-	0.0	54%
Blast2go	protein grip	-	-	3.61302e-19	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi vesicle transport	GO:0048193	Biological Process	3.61302e-19	72%
Blast2go	protein binding	GO:0005515	Molecular Function	3.61302e-19	72%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	3.61302e-19	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	GRIP	IPR000237	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S2T0-2

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 164 - 765

Fln protein: EDVEAQLSIASEKASQAMAQQSAVQEELECTRRQTGEALRSLDGEKQQLRSANSRQKEILEELRRTLEAREHDIEELKQSLSEKDQMLQDTKVSLKAMDEKRQSSLSELATKHQKIVESFESQLADATLERSKAAEAISKLQEELADRESKLAELEAASTGEAV

Protein Length: 165

Fln nts: GAAGATGTTGAGGCTCAGCTTTCAATTGCGAGTGAGAAAGCTTCACAAGCCATGGCACAGCAATCTGCAGTCCAAGAGGAACTGGAATGCACTCGACGTCAAACAGGTGAAGCACTACGGTCCTTAGATGGGGAGAAGCAGCAATTACGCAGTGCTAATAGTAGGCAGAAAGAGATTCTTGAGGAGTTGCGTCGAACTTTGGAAGCTAGGGAGCATGATATAGAAGAATTAAAGCAGTCTCTTTCTGAGAAAGATCAGATGTTGCAAGATACAAAAGTCTCATTAAAAGCCATGGACGAAAAGCGCCAATCTTCCCTCTCTGAACTTGCTACAAAACATCAAAAGATTGTGGAGAGCTTTGAATCTCAGTTGGCTGATGCAACCTTGGAAAGGAGCAAAGCAGCTGAGGCAATATCAAAGCTACAGGAAGAGCTGGCTGACAGAGAATCAAAGCTTGCAGAGTTGGAGGCAGCTTCTACAGGCGAGGCAGTGAG

Fln Alignment:

biogeco2_mira_c17455___LECTRRQTGEALRSLDGEKQQLRSANSRQKXXXXXXXXXXXXXXHDIEELKQSLSEKDQMLQDTKVSLKAMDEKRQSSLSELATKHQKIVESFESQLADATLERSKAAEAISKLQEELADRESKLAELEAASTGEA
Q8S2T0-2________________LERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLEGLEAQVVDALSERDKAAETISSLQVLLAEKESKIAEMEAAATGEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain