SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18436

Length: 511 nt

UniGene Fasta

>biog2_v2.0_unigene18436
GGCGGTGCATTCTGGAAAAAAATTCATAAACTGAGAGCGGGTTGTAGCAATTGTAAGACAAGGGCTATAATGGCGTCGGCTCCCCAGCGAGAAAAGGATCCGAAGAAACGGATAGTTATAACAGGAGTGGGACTCGTCTCTGTATTTGGGAGCGACGTCGATACGTTTTATGACAAGCTTTTGGAGGGAGAGAGCGGTATTGGGTTCATAGATCGATTCGATGCCTCGAGTTACAGTGTTAGATTTGCAGGCCAAATACGTGGGTTTTCTGCAAATGGGTACATTGACGAGAAGAATGACCGCCGGCTTGACGATTGCTGGAGATACGGTTTGGTCAGTGGGAAGATGGCTCTTGAAAACGCTAATCTCGGCCACCAACAGTTGGAGGGGGTAGACAAGAGCCGTGTAGGGGTCCTGTTGGGAAGCGGGATTGGTGGTGTTACAACCTACTCTGCTGGAATCGAAGCTTTTTGCGGAAGGGCTACCAGAGGATCACGCCATTTTCATTCCT

Ace file of the UniGene biog2_v2.0_unigene18436

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9203	1/2
SustainPine v2.0	sp_v2.0_unigene47274	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	beta-ketoacyl-ACP synthetase I-2 [Glycine max]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	0.0	87%
Blast2go	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABC3

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 170 - 481

Fln protein: GGAFWKKIHKLRAGCSNCKTRAIMASAPQREKDPKKRIVITGVGLVSVFGSDVDTFYDKLLEGESGIGFIDRFDASSYSVRFAGQIRGFSANGYIDEKNDRRLDDCWRYGLVSGKMALENANLGHQQLEGVDKSRVGVLLGSGIGGVTTYSAGIEAFCGRATRGSRHFHS

Protein Length: 171

Fln nts: GGCGGTGCATTCTGGAAAAAAATTCATAAACTGAGAGCGGGTTGTAGCAATTGTAAGACAAGGGCTATAATGGCGTCGGCTCCCCAGCGAGAAAAGGATCCGAAGAAACGGATAGTTATAACAGGAGTGGGACTCGTCTCTGTATTTGGGAGCGACGTCGATACGTTTTATGACAAGCTTTTGGAGGGAGAGAGCGGTATTGGGTTCATAGATCGATTCGATGCCTCGAGTTACAGTGTTAGATTTGCAGGCCAAATACGTGGGTTTTCTGCAAATGGGTACATTGACGAGAAGAATGACCGCCGGCTTGACGATTGCTGGAGATACGGTTTGGTCAGTGGGAAGATGGCTCTTGAAAACGCTAATCTCGGCCACCAACAGTTGGAGGGGGTAGACAAGAGCCGTGTAGGGGTCCTGTTGGGAAGCGGGATTGGTGGTGTTACAACCTACTCTGCTGGAATCGAAGCTTTTTGCGGAAGGGCTACCAGAGGATCACGCCATTTTCATTCCT

Fln Alignment:

biogeco2_mira_c17440___HKLRAGCSNCKTRAIMASAPQREKDPKKRIVITGVGLVSVFGSDVDTFYDKLLEGESGIGFIDRFDASSYSVRFAGQIRGFSANGYIDEKNDRRLDDCWRYGLVSGKMALENANLGHQQLEGVDKSRXXXXXXXXXXXXTTYSAGIEA
D5ABC3__________________HKLRAGGRNGKTRATMASVPKREKDPKKRIVITGMGLVSVFGSDVDSFYDKLLEGQSGIGFIDRFDASSYSVRFAGQIRGFSANGYIDGKNDRRLDDCWRYCLVSGKMALENADLGKEKLEKLDKSRIGVLVGSGIGGLTAYSDGIKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain