SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18389

Length: 484 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18389
TAGTGTGCCTGATTCAGAACGCTTATCAGTAGATGATCCCACGACTCAACTGCCTGCGATTCCATCGATTCCAATATCAGCAGAGGATGCCACAACCATAATGAAGTCGCTCGATGGCCCGGTTGCTCCTGCAGAGTGGCATGGTGCTCTGGACTTGCTTGCATATCGCCTTGGTCGGGGACCAAGCATTCTCAATCTTCACTACAAGTCAAATCATACCATTACCACGATTCGAGATGTATTTGGACTCATAAAAGGTTCGGAGGAACCTAACAGGTTAGGTGGAAAGGGATCCGATTTTGCCCCTTTTGTACAGCACGCCGGAATTCCAGGCGCTGACTTCGCCTTTGGAAATGACTTTCCGACATATCATTCTCTGTATGACGATTACGTGTGGATGGAAAAATATGGCGACCCGCTTTTCCATAGGCATGTTGCACTGGGAGCAATATGGGGTCTAACAGCGCTCAAGCTAGCGGATGCA

Ace file of the UniGene biog2_v2.0_unigene18389 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene283	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M28 family protein [Arabidopsis thaliana] gb\|AAP37682.1\| At5g19740 [Arabidopsis thaliana] gb\|AED92744.1\| Peptidase M28 family protein [Arabidopsis thaliana]	-	-	49%
FL-Next	sp=Probable glutamate carboxypeptidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	probable glutamate carboxypeptidase 2-like isoform 1	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	exopeptidase activity	GO:0008238	Molecular Function	0.0	67%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transferrin receptor-like, dimerisation domain	IPR007365	-	-
Sma3	Peptidase M28	IPR007484	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M1S8

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 161 - 705

Fln protein: SVPDSERLSVDDPTTQLPAIPSIPISAEDATTIMKSLDGPVAPAEWHGALDLLAYRLGRGPSILNLHYKSNHTITTIRDVFGLIKGSEEPNRLGGKGSDFAPFVQHAGIPGADFAFGNDFPTYHSLYDDYVWMEKYGDPLFHRHVALGAIWGLTALKLADA

Protein Length: 162

Fln nts: TAGTGTGCCTGATTCAGAACGCTTATCAGTAGATGATCCCACGACTCAACTGCCTGCGATTCCATCGATTCCAATATCAGCAGAGGATGCCACAACCATAATGAAGTCGCTCGATGGCCCGGTTGCTCCTGCAGAGTGGCATGGTGCTCTGGACTTGCTTGCATATCGCCTTGGTCGGGGACCAAGCATTCTCAATCTTCACTACAAGTCAAATCATACCATTACCACGATTCGAGATGTATTTGGACTCATAAAAGGTTCGGAGGAACCTAACAGGTTAGGTGGAAAGGGATCCGATTTTGCCCCTTTTGTACAGCACGCCGGAATTCCAGGCGCTGACTTCGCCTTTGGAAATGACTTTCCGACATATCATTCTCTGTATGACGATTACGTGTGGATGGAAAAATATGGCGACCCGCTTTTCCATAGGCATGTTGCACTGGGAGCAATATGGGGTCTAACAGCGCTCAAGCTAGCGGATGCA

Fln Alignment:

biogeco2_mira_c17380___VPDSERLSVDDP--TTQLPAIPSIPISAEDATTIMKSLDGPVAPAEWHGALDL-LAYRLGRGPSILNLHYKSNHTITTIRDVFGLIKGSEEPNR
Q9M1S8__________________VVGGEKLSLDDELVTRRFPKIPSLPLSLRNAEIILASLGGARAPLEWRNSGRVGPGQRVGPGRMVINMTFQGEMKMKKINNVVVTIRGSEEADR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain