SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18364

Length: 306 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18364
TGGACGCCATTACGGGACCTCATTTTCAGATTGCTGGAGAAGGAACCAGAGAAGAGATTGGGGTTCTGCCACGGAGTTCACCACNTAAAAAGCCATGCTTTCTTCAGGGGACTCGACTGGGACGGCATTCACAGCTTGTCCAGACCTCCCTTTGTCCCCTCTCTCTTTTCCCTCGACGACATGAAGGCGATGGAGGGCGTCGACATTGAAGAATGTCTCGAAAACCTAGACACAAAATTCGCCTTTAGGCTCAACAGTCACAAGCACAGCAGCAGATCGAAGGAGGAGGATTCCACAGAGGACGCT

Ace file of the UniGene biog2_v2.0_unigene18364 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59367	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AAD30630.1\|AC006085_3 Similar to protein kinases [Arabidopsis thaliana] gb\|AAG50535.1\|AC079828_6 serine/threonine protein kinase, putative [Arabidopsis thaliana] dbj\|BAF01247.1\| putative s	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	kinase family protein	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	61%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	61%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	61%
Blast2go	protein kinase binding	GO:0019901	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: STOP codon was not found. Distance to subject end: 26 aas, your sequence is shorter than subject: 102 - 385

Fln protein: WTPLRDLIFRLLEKEPEKRLGFCHGVHHLKSHAFFRGLDWDGIHSLSRPPFVPSLFSLDDMKAMEGVDIEECLENLDTKFAFRLNSHKHSSRSKEEDSTEDA

Protein Length: 103

Fln nts: TGGACGCCATTACGGGACCTCATTTTCAGATTGCTGGAGAAGGAACCAGAGAAGAGATTGGGGTTCTGCCACGGAGTTCACCACtTAAAAAGCCATGCTTTCTTCAGGGGACTCGACTGGGACGGCATTCACAGCTTGTCCAGACCTCCCTTTGTCCCCTCTCTCTTTTCCCTCGACGACATGAAGGCGATGGAGGGCGTCGACATTGAAGAATGTCTCGAAAACCTAGACACAAAATTCGCCTTTAGGCTCAACAGTCACAAGCACAGCAGCAGATCGAAGGAGGAGGATTCCACAGAGGACGCT

Fln Alignment:

biogeco2_mira_c17354___TPLRDLIFRLLEKEPEKRLGFCHGVHHLKSHAFFRGLDWDGIHSLSRPPFVPSLFSLDDMKAM--EGVDIEECLEN
A9NPF9__________________SPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSFEHSRIVMDDSVHTIEMFEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain