SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18362

Length: 262 nt

UniGene Fasta

>biog2_v2.0_unigene18362
ATGGGGCTCATGGAACAATGGAGGAAAAGATATATAAACGGTAGCAAAGGAGGGTCTTGCAGCAAGAGTTGTCGATAAGCAACAGGTTCACAGGTCCATGACTAAAGAGGAAGTTTTACTTCTATTCAATTTTGAAGATAATGACAATATTGCCAATAATTCAGATGGAGTGAAAGAGCGAATCACCCAGCTAGAGAATACAGCAGAAGCACCAGTTAATTCTAATGAAAATCCATCAGTTGATATGCTCGGTTCTTCACCA

Ace file of the UniGene biog2_v2.0_unigene18362

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3803	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative helicase [Oryza sativa Japonica Group]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	100%
Blast2go	dead-like helicase domain-containing protein	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	63%
Blast2go	helicase activity	GO:0004386	Molecular Function	63%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	63%
Blast2go	DNA binding	GO:0003677	Molecular Function	63%
Blast2go	RNA binding	GO:0003723	Molecular Function	63%
Blast2go	ATP binding	GO:0005524	Molecular Function	63%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E0CU60

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 149 aas, your sequence is shorter than subject: 87 - 1477

Fln protein: GAHGTMEEKIYKxxAKEGLAARVVDKQQVHRSMTKEEVLLLFNFEDNDNIANNSDGVKERITQLENTAEAPVNSNENPSVDMLGSSP

Protein Length: 88

Fln nts: ATGGGGCTCATGGAACAATGGAGGAAAAGATATATAAAxxxxxxGCAAAGGAGGGTCTTGCAGCAAGAGTTGTCGATAAGCAACAGGTTCACAGGTCCATGACTAAAGAGGAAGTTTTACTTCTATTCAATTTTGAAGATAATGACAATATTGCCAATAATTCAGATGGAGTGAAAGAGCGAATCACCCAGCTAGAGAATACAGCAGAAGCACCAGTTAATTCTAATGAAAATCCATCAGTTGATATGCTCGGTTCTTCACCA

Fln Alignment:

biogeco2_mira_c17352___AHGTMEEKIYKRxVAKEGLAARVVDKQQVHRSMTKEEVLLLFNFEDNDNIANNSDGVKERITQLENT
E0CU60__________________AHGTMEEKIYKRxVTKEGLAARVVDRQQVHRTISKEEMLHLFDFGDDE----NPDILPERGKEEEHT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain