SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18353

Length: 450 nt

UniGene Fasta

>biog2_v2.0_unigene18353
AAAATATATCTCAAGGAGGAGGGGAAGAATCAATGGCAGCAGTGGCCTCTCCTGCCCTGTCAAGATCTGGAGGCACATCAGCAGAGGAGTGTTTTGCTTGTACCCAGATAGAAACCCCAGCTTTCCATTCCATTAGCTGTAATAAGAGCAACCATCTCCACTGGGAAGCCAATGCAGGTTCCTCNGTTTTTCCAACCGAATGCCAAGTTCATCAGCCATGCCTGCAGTCAAGGAAGAGAGATAAATGGATATTTGGAATAGTATTGGACCCAAGAAGCAAAGGCATCCAGAGATGGAACAGGATTATTCTTCCTGTGTGTGCCATTGGATTGGCAATTGACCCCCTTTTCTTTATGTTCTCTCCATTAGTAAAGACCTAATGTGCACCTGCCTAGATGGGAAGTTCGCTGTTCTCGTGACTGTTCTGCGTTCTACCAGTGATGCCTTGCA

Ace file of the UniGene biog2_v2.0_unigene18353

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14496	1/2
SustainPine v2.0	sp_v2.0_unigene55314	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclic nucleotide-gated ion channel 2 n=5 Tax=Brassicaceae RepID=CNGC2_ARATH	-	-	72%
FL-Next	sp=Cyclic nucleotide-gated ion channel 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	dnd1	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	84%
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	84%
Blast2go	nitric oxide mediated signal transduction	GO:0007263	Biological Process	84%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	84%
Blast2go	calcium channel activity	GO:0005262	Molecular Function	84%
Blast2go	cyclic nucleotide binding	GO:0030551	Molecular Function	84%
Blast2go	intracellular cAMP activated cation channel activity	GO:0005222	Molecular Function	84%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O65718

Fln msg: Overlapping hits, possible frame ERROR between 353 and 341, Distance to subject end: 548 aas, your sequence is shorter than subject: 149 - 726

Fln protein: NISQGGGEESMAAVASPALSRSGGTSAEECFACTQIETPAFHSISCNKSNHLHWEANAGSSVFPTECQVHQPCLQSRKRDKWIFGIVLDPRSKGIQRWNRIILPVCAIGLAIxxxxxxVLSISKDLMCTCLDGKFAVLVTVLRSTSDAL

Protein Length: 150

Fln nts: AAAATATATCTCAAGGAGGAGGGGAAGAATCAATGGCAGCAGTGGCCTCTCCTGCCCTGTCAAGATCTGGAGGCACATCAGCAGAGGAGTGTTTTGCTTGTACCCAGATAGAAACCCCAGCTTTCCATTCCATTAGCTGTAATAAGAGCAACCATCTCCACTGGGAAGCCAATGCAGGTTCCTCaGTTTTTCCAACCGAATGCCAAGTTCATCAGCCATGCCTGCAGTCAAGGAAGAGAGATAAATGGATATTTGGAATAGTATTGGACCCAAGAAGCAAAGGCATCCAGAGATGGAACAGGATTATTCTTCCTGTGTGTGCCATTGGATTGGCAATTxxxxxxxxxxxxxxxxxxGTTCTCTCCATTAGTAAAGACCTAATGTGCACCTGCCTAGATGGGAAGTTCGCTGTTCTCGTGACTGTTCTGCGTTCTACCAGTGATGCCTTGCA

Fln Alignment:

biogeco2_mira_c17343___GGGEESMAAVASPALSRSGGTSAEECFACTQIETPAFHSISCNKSNHLHWEANAGSSVFP-TECQVHQPCLQSRKRDKWIFGIVLDPRSKGIQRWNRIILPVCAIGLAIDxxxxYVLSISKDLMCTCL--DGKFAVLVTVLRSTSDAL
O65718__________________GGDSSSSGSDETPVLS------SVECYACTQVGVPAFHSTSCDQAHAPEWRASAGSSLVPIQEGSVPNPARTRFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDxxxxYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain