SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18350

Length: 126 nt

UniGene Fasta

>biog2_v2.0_unigene18350
CTCTTTAAACATGGGAAGGGCGCCTTGCTGCTCTAACGGTGACAGAAACAAAGGAGCTTGGACCAAAGAGAGGATGACAGGCTTATCCAATATATTAAGGTTCATGGAGAGGGTTGCTGGCGCTCT

Ace file of the UniGene biog2_v2.0_unigene18350

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3214	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	transcription factor myb4	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	72%
Blast2go	response to UV-B	GO:0010224	Biological Process	72%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	72%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	72%
Blast2go	DNA binding	GO:0003677	Molecular Function	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXX6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 70 and 70, Distance to subject end: 203 aas, your sequence is shorter than subject: 39 - 242

Fln protein: MGRAPCCSNGDRNKGAWTKxxDDRLIQYIKVHGEGCWRS

Protein Length: 40

Fln nts: CTCTTTAAAC_-_ATGGGAAGGGCGCCTTGCTGCTCTAACGGTGACAGAAACAAAGGAGCTTGGACCAAAxxxxxxGATGACAGGCTTATCCAATATATTAAGGTTCATGGAGAGGGTTGCTGGCGCTCT

Fln Alignment:

biogeco2_mira_c17340___MGRAPCCSNGDRNKGAWTKEEDDRLIQYIKVHGEGCWRS
A9NXX6__________________MGRAPCCANGDRNKGVWTKEEDDRLIQYIQAHGEGCWRS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain