SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18332

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18332
TTGACAGAGGATGGCTTAAACTGTGGCATGGAATGCGGACTTCTCAGATCTGTTGTGAGCTATAGCCTATCACTTATCAAGGCTGCAAGTTAAACGTCTTAAATTCCATAATCATGTCACAGAACTGGGAAGCTGATAAAATGCTGGATGTCTACATTTATGATTACCTTGTAAAGAGGAACTTGCAGTTGTCTGCAAAGGCTTTTCAGACTGGAAGGGAAAGTTTCCCCTGAACCAGTTGCCATAGATGCTCCAGGAGGCTTTTTATTTGAGTGGTGGTCAGTATTTTGGGATATATTCATTGCCAGGACTAATGAGAAGCACTCAGAAGTGGCTGCCACATACATAGATACACAACTGCAGAAAGCACGAGAGCGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCAGGGTTTGGGATGCAGATAATCCAAGCTATTCATTGAGAACGTTTACTGGTCATTTAGGAACTGTTATGTCTCTTGATTTCCATCCAAACAATGATCTTCTCTGCTCTTGTGATGGAGAAAAT

Ace file of the UniGene biog2_v2.0_unigene18332 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13165	1/2
SustainPine v2.0	sp_v2.0_unigene21708	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00400, WD40, WD domain, G-beta repeat	-	-	3.0e-07	52%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	transcriptional corepressor leunig	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	78%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	78%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: Overlapping hits, possible frame ERROR between 209 and 205, Distance to subject end: 172 aas, your sequence is shorter than subject: 141 - 931

Fln protein: MSQNWEADKMLDVYIYDYLVKRNLQLSAKAxxxLEGKVSPEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAATYIDTQLQKAREREQQQQQQQQQQSGFGMQIIQAIH*ERLLVI*ELLCLLISIQTMIFSALVMEK

Protein Length: 142

Fln nts: TTGACAGAGGATGGCTTAAACTGTGGCATGGAATGCGGACTTCTCAGATCTGTTGTGAGCTATAGCCTATCACTTATCAAGGCTGCAAGTTAAACGTCTTAAATTCCATAATC_-_ATGTCACAGAACTGGGAAGCTGATAAAATGCTGGATGTCTACATTTATGATTACCTTGTAAAGAGGAACTTGCAGTTGTCTGCAAAGGCTxxxxxxxxxCTGGAAGGGAAAGTTTCCCCTGAACCAGTTGCCATAGATGCTCCAGGAGGCTTTTTATTTGAGTGGTGGTCAGTATTTTGGGATATATTCATTGCCAGGACTAATGAGAAGCACTCAGAAGTGGCTGCCACATACATAGATACACAACTGCAGAAAGCACGAGAGCGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCAGGGTTTGGGATGCAGATAATCCAAGCTATTCATTGAGAACGTTTACTGGTCATTTAGGAACTGTTATGTCTCTTGATTTCCATCCAAACAATGATCTTCTCTGCTCTTGTGATGGAGAAAAT

Fln Alignment:

biogeco2_mira_c17317___MSQ-NWEADKMLDVYIYDYLVKRNLQLSAKAxxLEGKVSPEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAATYIDTQLQKARERE
Q9FUY2__________________MSQTNWEADKMLDVYIHDYLVKRDLKATAQAxxAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQMIKAREQQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
130	157	TGC TGC TGC TGC TGC TGC TGC TGC TGC T	28

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain