SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18298

Length: 415 nt

UniGene Fasta

>biog2_v2.0_unigene18298
AAAGCGGGCATTGAGGTTGTACCTATCTTTATATCAGTGGATCCAGAGAGGGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGAATTCCATCCAAATCTGGTGGGTTTAACAGGAAGTCAGAGTGATATCAGACAGGTTGCCCGAGAATTCCGAGTTTACTACATGAAGACAGAAGAGGAAGAAGCTGATTACCTTGTAGACCATTCTATTATCATGTATTTAATGGACCCAGACATGGAATTTGTGAAATTCTTTGGGAAAAATTATGATGTCGATGCTTTGACGGAGGGAGTAATTAATGAAGTCAAATCCTATAAAATATAATTGTTTTACCGGATTTACTCAGACTTTGTGGTATGCTGTCCTTCCACGTAAGGATGGATGTCCATTAATAATAGTTCCATTGGAGCTA

Ace file of the UniGene biog2_v2.0_unigene18298

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1983	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	electron transport SCO1/SenC-like protein [Arabidopsis thaliana] gb\|AAL49889.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AAM20370.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AAM62491.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AEE7470	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	sco1 protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transport	GO:0006825	Biological Process	89%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	89%
Blast2go	respiratory chain complex IV assembly	GO:0008535	Biological Process	89%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	89%
Blast2go	embryo development	GO:0009790	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	89%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Copper chaperone SCO1/SenC	IPR003782	-	-
Sma3		IPR012335	-	-
Sma3	Synthesis of cytochrome c oxidase, Sco1/Sco2	IPR017276	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU72

Fln msg: your sequence is shorter than subject: 109 - 331

Fln protein: KAGIEVVPIFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYKI*

Protein Length: 110

Fln nts: AAAGCGGGCATTGAGGTTGTACCTATCTTTATATCAGTGGATCCAGAGAGGGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGAATTCCATCCAAATCTGGTGGGTTTAACAGGAAGTCAGAGTGATATCAGACAGGTTGCCCGAGAATTCCGAGTTTACTACATGAAGACAGAAGAGGAAGAAGCTGATTACCTTGTAGACCATTCTATTATCATGTATTTAATGGACCCAGACATGGAATTTGTGAAATTCTTTGGGAAAAATTATGATGTCGATGCTTTGACGGAGGGAGTAATTAATGAAGTCAAATCCTATAAAATATAA___TTGTTTTACCGGATTTACTCAGACTTTGTGGTATGCTGTCCTTCCACGTAAGGATGGATGTCCATTAATAATAGTTCCATTGGAGCTA

Fln Alignment:

biogeco2_mira_c17275___KAGIEVVPIFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYK
A9NU72__________________KAGFEVVPVFISVDPERDTVEQVHEYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain