SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18268

Length: 360 nt

UniGene Fasta

>biog2_v2.0_unigene18268
TTACATGGGGTACGTGAGAGAAACGGGCTTTGTGTGGCTGAAGCAGAAGAAGAAGAGTGAGCACCTGTTCAAGATATTGGGAAAGTGGTACAATATGGTAAAGNGATCAGTTGCTATGTTGAGCATCACAAGATGAAGAAGGTGACTGGATGAAGAGCAAGGAACTGAATCCTNTGGATCACTGTCTCTGAGATGTCCATTAATGATGCATCCAGTGANAAGGTTTACTTCAAAAGTGCTGCTGGGATTGGGAAATCCTTCCCTGCCAGTGCTTTTGAAACTGAAGAGAATGGCAACAGGTAGAATATGGGTACTGGAAGATTATGATGAGTTGGGCAATTTGTTTTCTGGTTTCTTTGT

Ace file of the UniGene biog2_v2.0_unigene18268

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7857	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	2.0e-27	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	uncharacterized protein loc100245914	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ66

Fln msg: Overlapping hits, possible frame ERROR between 85 and 76, your sequence is shorter than subject: 101 - 146

Fln protein: YMGYVRETGFVWLKQKKKSEHLFKxxxxxVQYGKEISCYVEHHKMKKVTG*RARN*ILWITVSEMSINDASSDKVYFKSAAGIGKSFPASAFETEENGNR*

Protein Length: 102

Fln nts: TTACATGGGGTACGTGAGAGAAACGGGCTTTGTGTGGCTGAAGCAGAAGAAGAAGAGTGAGCACCTGTTCAAGxxxxxxxxxxxxxxxGTACAATATGGTAAAGaGATCAGTTGCTATGTTGAGCATCACAAGATGAAGAAGGTGACTGGATGAAGAGCAAGGAACTGAATCCTcTGGATCACTGTCTCTGAGATGTCCATTAATGATGCATCCAGTGAtAAGGTTTACTTCAAAAGTGCTGCTGGGATTGGGAAATCCTTCCCTGCCAGTGCTTTTGAAACTGAAGAGAATGGCAACAGGTAGAATATGGGTACTGGAAGATTATGATGAGTTGGGCAATTTGTTTTCTGGTTTCTTTGT

Fln Alignment:

biogeco2_mira_c17237___GYVRETGFVWLKQKKKSEHLFKIxxxVVQYGKEISCYVEHHKMKKVTG*RARN*ILWITVSEMSINDASSDKVYFKSAAGIGKSFPASAFETEENGNR
A9NQ66__________________GYVKETGFVWLKQKKKTEHQFKKxxxMVQYGTEITAYVEQRKMKKLTGVKSKELFLWITICEISIDDPSSGKIYFKSSTGVGKTFPASAFEIEENGNK

SSRs (tot: 1)

Start position	End position	Sequence	Length
45	56	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain