SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18248

Length: 308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18248
CAAGAGGAAGGAGAAGCAGAAGATTGGGACCTCTTCTAAGCCCATTTCAACAGATGCCCATGTGGCAGAAACCCTGGAAAAGCTTGCCCAGCAGACCAGACAGACGCTGCAGGGCCTGGACTCAGCCGGCCAAGAGGATGTTGCTGGAGAAAAGCTGGTTGAAAATCTCTTCAAACAATTCGAGGAGATCGGTGGAACCCAGGATATGCAATCTGTTGTTGACACAATGATGCGTCAACTATTGTCTAAGGAGATTCTCCATGAGCCAATGAAGGAGATAGGAGAGCGATATCCTAAATGGCTGGAAG

Ace file of the UniGene biog2_v2.0_unigene18248 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14961	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxisome biogenesis protein 19-2 n=2 Tax=Arabidopsis RepID=PE192_ARATH	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	peroxisomal protein pex19 family protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	peroxisome organization	GO:0007031	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	cytosol	GO:0005829	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pex19 protein	IPR006708	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRV0

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 102 - 254

Fln protein: KRKEKQKIGTSSKPISTDAHVAETLEKLAQQTRQTLQGLDSAGQEDVAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLE

Protein Length: 103

Fln nts: CAAGAGGAAGGAGAAGCAGAAGATTGGGACCTCTTCTAAGCCCATTTCAACAGATGCCCATGTGGCAGAAACCCTGGAAAAGCTTGCCCAGCAGACCAGACAGACGCTGCAGGGCCTGGACTCAGCCGGCCAAGAGGATGTTGCTGGAGAAAAGCTGGTTGAAAATCTCTTCAAACAATTCGAGGAGATCGGTGGAACCCAGGATATGCAATCTGTTGTTGACACAATGATGCGTCAACTATTGTCTAAGGAGATTCTCCATGAGCCAATGAAGGAGATAGGAGAGCGATATCCTAAATGGCTGGAAG

Fln Alignment:

biogeco2_mira_c17215___KRKEKQKIGTSSKPISTDAHVAETLEKLAQQTRQTLQGLDSAGQEDVAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLE
A9NRV0__________________KRKGKQKIGTSSKPMSTDAHVAETLEKLAQQTRQTLQGLDSATQEDPAGEKLVENLFKQFEEIGGTQDMQSVVDTMMRQLLSKEILHEPMKEIGERYPKWLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain