SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18235

Length: 224 nt

UniGene Fasta

>biog2_v2.0_unigene18235
CTTCACTGGTGCTGACTTAAGTGATACAGTGATGGATCGCATGGTACTCAATGAGGCTAATCTTACCAATGCAGTTCTTGTGAGATCAGTCCTTACTCGTAGTGACCTTGGTGGTGCTGTTATTGAGGGTGCTGACTTCAGTGATGCAGTCATGGACCTCACTCAAAAACAGGCATTATGCAAGTATGCAAGTGGAACTAATCCTATAACAGGTATGGATACAA

Ace file of the UniGene biog2_v2.0_unigene18235

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1464	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pentapeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q8H1Q1.1\|TL225_ARATH RecName: Full=Thylakoid lumenal protein At1g12250, chloroplastic; Flags: Precursor gb\|AAN13098.1\| unknown protein [Arabidopsis thaliana] gb\|AEE28857.1\| Pentapeptide repe	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	pentapeptide repeat-containing protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	88%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentapeptide repeat	IPR001646	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT46

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 74 - 291

Fln protein: FTGADLSDTVMDRMVLNEANLTNAVLVRSVLTRSDLGGAVIEGADFSDAVMDLTQKQALCKYASGTNPITGMDT

Protein Length: 75

Fln nts: CTTCACTGGTGCTGACTTAAGTGATACAGTGATGGATCGCATGGTACTCAATGAGGCTAATCTTACCAATGCAGTTCTTGTGAGATCAGTCCTTACTCGTAGTGACCTTGGTGGTGCTGTTATTGAGGGTGCTGACTTCAGTGATGCAGTCATGGACCTCACTCAAAAACAGGCATTATGCAAGTATGCAAGTGGAACTAATCCTATAACAGGTATGGATACAA

Fln Alignment:

biogeco2_mira_c17199___FTGADLSDTVMDRMVLNEANLTNAVLVRSVLTRSDLGGAVIEGADFSDAVMDLTQKQALCKYASGTNPITGMDT
A9NT46__________________FTGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDFTQKQALCKYASGTNPITGIST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain