SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18219

Length: 362 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18219
GCAAGGATCAATTCCAGAGTCACTGGGATATATTGCTGATTTGAACTCCTTAAATATTCAAACAACAAACTATCTGGTTCTGTTCCAGAGAGTCTTGGTGCACTGAAGCTCAGTTTTCTTGACTTATCCAACAATAAGTTAACTGGGCCCGTTCCAGATTCACTCATCAGTGAGGTTAACTTACAAAGCTTTTCAGGGAATCCAGGGCTCTGTGCTAAAAGATCTGGAAATGATAATTCTAATAATAACAATATAGTTGGGACTTGTTCTGATTCTCATTCTGGGAAAGGACCTAGGCAAATTGGAATTATCTCTGGGCTCATAATTGGCACAGCATTGTTAGTATTTGTGATTGGATTAGT

Ace file of the UniGene biog2_v2.0_unigene18219 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5697	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9R6R4_RICCO	-	-	46%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	34%
Blast2go	receptor protein kinase clavata1	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	65%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	65%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	65%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	65%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 346 aas, your sequence is shorter than subject: 120 - 998

Fln protein: ARINSRVTGIYC*FELLKYSNNKLSGSVPESLGALKLSFLDLSNNKLTGPVPDSLISEVNLQSFSGNPGLCAKRSGNDNSNNNNIVGTCSDSHSGKGPRQIGIISGLIIGTALLVFVIGL

Protein Length: 121

Fln nts: GCAAGGATCAATTCCAGAGTCACTGGGATATATTGCTGATTTGAACTCCTTAAATATTCAAACAACAAACTATCTGGTTCTGTTCCAGAGAGTCTTGGTGCACTGAAGCTCAGTTTTCTTGACTTATCCAACAATAAGTTAACTGGGCCCGTTCCAGATTCACTCATCAGTGAGGTTAACTTACAAAGCTTTTCAGGGAATCCAGGGCTCTGTGCTAAAAGATCTGGAAATGATAATTCTAATAATAACAATATAGTTGGGACTTGTTCTGATTCTCATTCTGGGAAAGGACCTAGGCAAATTGGAATTATCTCTGGGCTCATAATTGGCACAGCATTGTTAGTATTTGTGATTGGATTAGT

Fln Alignment:

biogeco2_mira_c17178___LKYSNNKLSGSVPESLGALKLSFLDLSNNKLTGPVPDSLISEVNLQSFSGNPGLCAKRSGXXXXXXXNIVGTCSDSHSGKGPRQI-GIISGLIIGTALLVFVIGL
Q19AV8__________________LDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYEKSFLGNPELCSREAFNG-------TKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain