SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18191

Length: 392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18191
TCTGAGGGTGCAGTTCCTCTTCTTGATCCGGATAATTGCCCCAATGGCTGGGCATCTCCTCCTGGGGACTGTTTCCGGGTGAGAGGACCTGATTACTTAACAACTAGGACAAAGATACCTGGAGGGGACTGGCTGCTTAAGCCTTTGGCTTTTGATTGGCTCAAAGGTCCCATAAGGTTGCTCAGGTGTTAAAGCATCCAAATGGTCGTGTGAAGCGGGCTTTAGAAGAAGCCTGTAAGAATTGCGAAAGTGACAAGAAGCCTTTTGTTTGGGCCTTCAATTTGNGGGTCCCCAGCAAGGATAACCATACTGCAGTTGCATACTTTGTGACTTTTGATCCGATACCAGAAGGATCTCTCATGGACCAATTTCTTAAAGGTGATGATGCATTC

Ace file of the UniGene biog2_v2.0_unigene18191 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10123	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1336 domain containing protein	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	lipid binding	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR7

Fln msg: Overlapping hits, possible frame ERROR between 180 and 174, Distance to subject end: 168 aas, your sequence is shorter than subject: 131 - 320

Fln protein: SEGAVPLLDPDNCPNGWASPPGDCFRVRGPDYLTTRTKIPGGDWLLKPLAFDWLKGPxxxxQVLKHPNGRVKRALEEACKNCESDKKPFVWAFNLWVPSKDNHTAVAYFVTFDPIPEGSLMDQFLKGDDAF

Protein Length: 132

Fln nts: TCTGAGGGTGCAGTTCCTCTTCTTGATCCGGATAATTGCCCCAATGGCTGGGCATCTCCTCCTGGGGACTGTTTCCGGGTGAGAGGACCTGATTACTTAACAACTAGGACAAAGATACCTGGAGGGGACTGGCTGCTTAAGCCTTTGGCTTTTGATTGGCTCAAAGGTCCCxxxxxxxxxxxxCAGGTGTTAAAGCATCCAAATGGTCGTGTGAAGCGGGCTTTAGAAGAAGCCTGTAAGAATTGCGAAAGTGACAAGAAGCCTTTTGTTTGGGCCTTCAATTTGtGGGTCCCCAGCAAGGATAACCATACTGCAGTTGCATACTTTGTGACTTTTGATCCGATACCAGAAGGATCTCTCATGGACCAATTTCTTAAAGGTGATGATGCATTC

Fln Alignment:

biogeco2_mira_c17143___GAVPLLDPDNCPNGWASPPGDCFRVRGPDYLTTRTKIPGGDWLLKPLAFDWLKGPIxxAQVLKHPNGRVKRALEEACKNCESDKKPFVWAFNLWVPSKDNHTAVAYFVTFDPIPEGSLMDQFLKGDDAF
A9NVR7__________________GSLQQVDPEDGINGWSSPPGNLFHVRGSNYFTKKQKVPAGDWLLKPLGMDWLKAGSxxDHVLGRPDNRVMAALSKANSDGKG-LKTFVFAVNLQVPGREPHSAVFYYATDDPIPVGSLFYRFIHEDDHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain