SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18190

Length: 227 nt

UniGene Fasta

>biog2_v2.0_unigene18190
ATGGGGGAACTTGCAATGAACGGTGTGGAGGAGTTGATCCGGATGGCACAGATTGATGAGCCTCTCTGGTTGAAGGATGTTAATGCGGGCAGCATGAAAGAGATTTTGAACTTGGATGAGTATGGCAGAACGTTTCCATGGGCAATGGACTTCAAGCACAACAATCTCAACCTCAGGACAGAAGCTACCAGAGACAGCTCTGTGGTAATCATGAATGGTGTGGCACT

Ace file of the UniGene biog2_v2.0_unigene18190

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9478	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens]	-	-	55%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	44%
Blast2go	homeobox-leucine zipper protein meristem l1	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	71%
Blast2go	cotyledon development	GO:0048825	Biological Process	71%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 75 - 708

Fln protein: MGELAMNGVEELIRMAQIDEPLWLKDVNAGSMKEILNLDEYGRTFPWAMDFKHNNLNLRTEATRDSSVVIMNGVA

Protein Length: 76

Fln nts: ATGGGGGAACTTGCAATGAACGGTGTGGAGGAGTTGATCCGGATGGCACAGATTGATGAGCCTCTCTGGTTGAAGGATGTTAATGCGGGCAGCATGAAAGAGATTTTGAACTTGGATGAGTATGGCAGAACGTTTCCATGGGCAATGGACTTCAAGCACAACAATCTCAACCTCAGGACAGAAGCTACCAGAGACAGCTCTGTGGTAATCATGAATGGTGTGGCACT

Fln Alignment:

biogeco2_mira_c17142___MGELAMNGVEELIRMAQIDEPLWLKDVNAGSMKEILNLDEYGRTFPWAMDFKHNNLNLRTEATRDSSVVIMNGV
Q8S555__________________LAELALASMDELFKMAQADETLWIPNLDAG--KETLNYEEYMRQFPSTITPK--LIGLATEATRETGMVITNSL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain