SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18131

Length: 403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18131
CGGCAATGGGCAAATCCGTTTGCGAGTGACAACTACTGCAAGAAGATGGGTCGATGGAACCCAAGTGCAGGAACTGGCTGATGGATTTGACCAGGAAGCTGCAGCAACAATTGTGGCCAGACTTGCTGTGCAAAAAACTGAGACTGAGGACATCCATGAGATTCTTAGATGGCTGGATAGGATGCTTATTCGTTTGCATCAAAATTTGGANACTATATAAAAGNTGATCCAACTTCCTTCCGCTTGTCCTCCAACTTTTCTCTTTATCCTCAATTTATGTATCATCTTCGTCGTTCACAATTCCTCCAAGTCTTCAACAACACTCCTGATGAGACTGCCTTTTTTAGATTGGTGCTTAACCGTGAAGGTGTAGTTGGTTCTCTTATAATGATCCAGCCCACAC

Ace file of the UniGene biog2_v2.0_unigene18131 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1790	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	sec23/sec24-like transport protein [Arabidopsis thaliana] gb\|AAO29951.1\| Unknown protein [Arabidopsis thaliana] gb\|AAQ56793.1\| At5g43670 [Arabidopsis thaliana] gb\|AED94993.1\| sec23/sec24-like transport protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	61%
Blast2go	protein transport protein sec23	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	77%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	transporter activity	GO:0005215	Molecular Function	77%
Blast2go	COPII vesicle coat	GO:0030127	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SGN2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 196 and 196, Distance to subject end: 137 aas, your sequence is shorter than subject: 134 - 752

Fln protein: GNGQIRLRVTTTARRWVDGTQVQELADGFDQEAAATIVARLAVQKTETEDIHEILRWLDRMLIRxxSKFGDYIKVDPTSFRLSSNFSLYPQFMYHLRRSQFLQVFNNTPDETAFFRLVLNREGVVGSLIMIQPT

Protein Length: 135

Fln nts: CGGCAATGGGCAAATCCGTTTGCGAGTGACAACTACTGCAAGAAGATGGGTCGATGGAACCCAAGTGCAGGAACTGGCTGATGGATTTGACCAGGAAGCTGCAGCAACAATTGTGGCCAGACTTGCTGTGCAAAAAACTGAGACTGAGGACATCCATGAGATTCTTAGATGGCTGGATAGGATGCTTATTCGTxxxxxxTCAAAATTTGGAgACTATATAAAAGtTGATCCAACTTCCTTCCGCTTGTCCTCCAACTTTTCTCTTTATCCTCAATTTATGTATCATCTTCGTCGTTCACAATTCCTCCAAGTCTTCAACAACACTCCTGATGAGACTGCCTTTTTTAGATTGGTGCTTAACCGTGAAGGTGTAGTTGGTTCTCTTATAATGATCCAGCCCACAC

Fln Alignment:

biogeco2_mira_c17070___GNGQIRLRVTTTARRWVDGTQVQELADGFDQEAAATIVARLAVQKTETEDIHEILRWLDRMLIRLASKFGDYIKVDPTSFRLSSNFSLYPQFMYHLRRSQFLQVFNNTPDETAFFRLVLNREGVVGSLIMIQPT
A9SGN2__________________GSGQMRLRVCTISRRWCDADHVQDLSANFDQETAAVVMARLAVFKTEHEEVFDIMRWLDRMLIRVAAKFGDYTKEDPQSFRLASNFSLYPQFMFHLRRSQFLQVFNNTPDESAFYRLMINREGVVGSLVMIQPT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain