SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene18029

Length: 345 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene18029
ATGGGGATATGACCTTTTCTCACAGATTACCAGAGAACCTATTCGTGTCTTTGTATTGTCCGACAGGGCTGATTGCGTAAACCCTAAACCCTAGCCAGATACCGGTCGAAGTTTTGCTGTGCGGATCCCTGGGATTTGCGGCCACTATTGGTGAATAGCAGCAATGGGACGTACCGGAAGGAAGAAAAAACATACACAAGGGAAAGTTGTGCAGTCAGACGTGCAGCACATAACAGGGGATAAGGTGCCAAAGAGTTTTGTCATCTCAAGAGGCAAGTTGCCACCACCAGTGAGGCAGCTTCAACTCGACCTACGAAAGTTAATGCTTCCACACACGGCTCTTAA

Ace file of the UniGene biog2_v2.0_unigene18029 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10902	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peter Pan-like protein [Arabidopsis thaliana] ref\|NP_974976.1\| Peter Pan-like protein [Arabidopsis thaliana] dbj\|BAB10077.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97515.1\| Peter Pan-like protein [Arabidopsis thaliana] gb\|AED97516.1\| Peter P	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	peter pan-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	78%
Blast2go	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Brix domain	IPR007109	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMU0

Fln msg: Distance to subject end: 433 aas, your sequence is shorter than subject: 60 - 491

Fln protein: MGRTGRKKKHTQGKVVQSDVQHITGDKVPKSFVISRGKLPPPVRQLQLDLRKLMLPHTAL

Protein Length: 61

Fln nts: ATGGGGATATGACCTTTTCTCACAGATTACCAGAGAACCTATTCGTGTCTTTGTATTGTCCGACAGGGCTGATTGCGTAAACCCTAAACCCTAGCCAGATACCGGTCGAAGTTTTGCTGTGCGGATCCCTGGGATTTGCGGCCACTATTGGTGAATAGCAGCA_-_ATGGGACGTACCGGAAGGAAGAAAAAACATACACAAGGGAAAGTTGTGCAGTCAGACGTGCAGCACATAACAGGGGATAAGGTGCCAAAGAGTTTTGTCATCTCAAGAGGCAAGTTGCCACCACCAGTGAGGCAGCTTCAACTCGACCTACGAAAGTTAATGCTTCCACACACGGCTCTTAA

Fln Alignment:

biogeco2_mira_c16950___MGRTGRKKKHTQGKVVQSDVQHITGDKVPKSFVISRGKLPPPVRQLQLDLRKLMLPHTAL
B8LMU0__________________MGRSRRRKKHTQEKVVQSDT---TGNKVPKSFVISRGKLPPPVRQLQLDLRKLMLPYTAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain