SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17985

Length: 258 nt

UniGene Fasta

>biog2_v2.0_unigene17985
GAAATGCTAGGCGTTCAAGCCCTCGACACAATTAAGAATTCCCCACCCGCCTCAATGGCTCGCCCTCCTCCCGAGCTTGCCAAGAATGCAAAAACTGCCTCCAAATATTTGTTTTCTCAGATAGTTCCTAAAGCTCCCAAATGTCCCATCAGCAGTTTGTTAACAGACGATTTTGACGCAGAGCAGATATGGCAGCAGATCGATTTGCAGGCCCAGCCTTTGCTCGCTTCTCTCAAGAAGCGAGTCAAAAATCTCGAC

Ace file of the UniGene biog2_v2.0_unigene17985

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene358	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	U3 small nucleolar ribonucleoprotein protein mpp10, putative n=1 Tax=Ricinus communis RepID=B9RB06_RICCO	-	-	43%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	51%
Blast2go	u3 small nucleolar ribonucleoprotein protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	69%
Blast2go	nucleolus	GO:0005730	Cellular Component	69%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Mpp10 protein	IPR007151	-	-
Sma3	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p	IPR012173	-	-
Sma3	Auxin efflux carrier, plant type	IPR014024	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9IET6

Fln msg: Distance to subject end: 461 aas, atg_distance in limit (1-15): atg_distance = 8, your sequence is shorter than subject: 85 - 554

Fln protein: MLGVQALDTIKNSPPASMARPPPELAKNAKTASKYLFSQIVPKAPKCPISSLLTDDFDAEQIWQQIDLQAQPLLASLKKRVKNLD

Protein Length: 86

Fln nts: GAA_-_ATGCTAGGCGTTCAAGCCCTCGACACAATTAAGAATTCCCCACCCGCCTCAATGGCTCGCCCTCCTCCCGAGCTTGCCAAGAATGCAAAAACTGCCTCCAAATATTTGTTTTCTCAGATAGTTCCTAAAGCTCCCAAATGTCCCATCAGCAGTTTGTTAACAGACGATTTTGACGCAGAGCAGATATGGCAGCAGATCGATTTGCAGGCCCAGCCTTTGCTCGCTTCTCTCAAGAAGCGAGTCAAAAATCTCGAC

Fln Alignment:

biogeco2_mira_c16900___EMLGVQALDTIKNSPPASMARPPPELAKNAKTASKYLFSQIVPKAPKCPISSLLTDDFDAEQIWQQIDLQAQPLLASLKKRV
B9IET6__________________EAAGMEALNRLKSIDPPLWLAPSSSLSQTARTACKHLFSSINPHVPKSPFDQLLIDGCDAEQIWQQIDLQSQPLLSSLRRQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain