SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17937

Length: 1164 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17937 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17386	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB multi-domain protein	-	-	5.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	negative regulation of seed germination	GO:0010187	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 299 - 390

Fln protein: SYKM*N*LSRHQRTVLPRL*ED*RKIHGRVLKHLLYLMRVSDKIVQRRVALALAHLCCVDDQRMIFIDNNGLDVLLGLLEPGSNSKQQHDGAVALHTLAKRATADCPIDAALPPPTPQVYLGEQYVNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGTVEVTADIAQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVERLLPEIRDYLFRILRPQPYMPSQ*

Protein Length: 300

Fln nts: AAGTTACAAGATGTAGAATTGATTGTCCAGGCATCAAAGGACTGTGTTGCCAAGACTTTAAGAGGATTGAAGAAAAATTCATGGAAGAGTATTGAAGCACTTACTTTATCTAATGCGTGTATCAGATAAAATTGTTCAAAGACGCGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTTGATGACCAGAGAATGATCTTCATTGATAACAATGGTTTGGATGTACTACTTGGACTATTGGAGCCTGGTTCAAATTCAAAACAACAACATGATGGTGCTGTAGCATTACATACACTTGCAAAAAGGGCTACTGCTGATTGTCCAATAGATGCCGCTCTTCCGCCTCCAACACCACAGGTATATTTGGGAGAGCAGTATGTCAACAGTCACACTTTATCAGATGTTACCTTTTTAGTGGAAGGTAGGCGATTTTATGCCCACAGGATTGCACTTCTGGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTACCGGGAAAAGGAGGCAAAGGATATTGAAATTCCAAACATAACCTGGGCAGTTTTTGAACTGATGATGAGATTTATATACACAGGTACAGTAGAGGTGACAGCAGATATTGCACAAGATCTTCTGAGGGCTGCTGATCAATACCTTTTGGAAGGCCTCAAACGTTTGTGTGAATATTCTATTGCACAGGACCTTACTGTGGAGAATTTTGCAAATATATATGATCTTGCTGAGTCCTATCATGCAACTTCTTTGGGCCATATGTGTGTTCTGTACTTTCTGGAGCACCATGAACAGATGTCTAACATGTCTGGCTACCCTTCCCTTGTGGAACGCTTACTACCAGAGATACGTGATTACTTGTTTAGAATATTAAGGCCACAGCCTTATATGCCTTCACAGTAA___AGGAAGTCATGATCATTTGATTGGCTTCTTGGATGGTCTCATCTTCGCTGAGAACTAGTGCAGATAGAGGTATTTTGAAGGTGTTTATCAGCATGCCATGACTACAGCTTGTTATATAAGATGCACTGATTTGTTAAGTGAAATGATTGCGAGACGTCAACTGAATGACACATTCTCAGATATTTTCAAAATGAACATAAAAGTTTGAAACCAGAGATGAGCCGTCAATTGATATTTGACGGTCTTTTGTGTTTCTCTGTCTCATC

Fln Alignment:

biogeco2_mira_c16795___PQVYLGEQY---VNSHTLSDVTFLVEGRRFYAHRIALLASSDAFRAMFDGGYREKEAKDIEIPNITWAVFELMMRFIYTGT---VEVTADI----------------AQDLLRAADQYLLEGLKRLCEYSIAQDLTVENFANIYDLAESYHATSLGHMCVLYFLEHHEQMSNMSGYPSLVE
B8LMS2__________________PESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFGSSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
546		20		80	0.995493
549			80	20	0.995498
583			25	75	0.996473
715	66		33		0.997452
952	66	33			0.997452
1087	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain