SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17919

Length: 891 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17919 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene136	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleobase ascorbate transporter n=6 Tax=rosids RepID=B9H2G7_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	nucleobase ascorbate transporter	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
468	83	16			0.994517
469	83	16			0.994517

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain