SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17903

Length: 1614 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17903

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15347	9/16
SustainPine v2.0	sp_v2.0_unigene15823	4/16
SustainPine v2.0	sp_v2.0_unigene22282	2/16

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nad-malate dehydrogenase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK*

Protein Length: 414

Fln nts: AGGAGAATTGTCCGTAGTTCACGTCAGCGGCTGGCTGAGCGTTCCGCTACTTGGCTGGTGCTCCGACTTCCTGAGCACA_-_ATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGCCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCCGAAAACGGACAGACTGTTCAGAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCAGGAGGGATTGGACAACCTCTTTCACTGTTGATTAAAATGTCTCCTTTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGAGTTGCTGCAGATCTCAGCCACTGTAACACTCCAGCACAGGTTCTAGATTTTACCGGGCCAGCTGAATTGGCAAATTCTTTGAAGGGTGTGGATGTCGTGGTCATCCCGGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACTGTCCCAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCCATTGCCGCTGAGGTGCTCAAGCAGAAAGGTGTATATGATCCTAAAAAGCTGTTTGGTGTCACCACCTTGGATGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGATGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAA___GCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCAGTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTT

Fln Alignment:

biogeco2_mira_c16654___MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK
A9NUM0__________________MASATSFMSSVSVSGFLAPICETRPSGAGLQ--ASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1321	80		20		0.995493
1365			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain