SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17881

Length: 1125 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17881

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13762	4/17
SustainPine v2.0	sp_v2.0_unigene16588	6/17
SustainPine v2.0	sp_v2.0_unigene61352	7/17

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] emb\|CAB81831.1\| putative protein [Arabidopsis thaliana] gb\|ABD91496.1\| At3g60450 [Arabidopsis thaliana] gb\|AEE80063.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	phosphoglycerate mutase-like protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	PRIB5	IPR012398	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPK4

Fln msg: Overlapping hits, possible frame ERROR between 855 and 852, your sequence is longer than subject: 363 - 317

Fln protein: MGDEYNLGVILNNLSAMRSLCPNLARTRYSHHCIEPLKSYSQSPTCINYNIKQGDSSVRILDRRQRFSNSSLVRGIVMIRSMESSSKKEPFVQNLFVMRHGERMDNYDSEWIRSAQRPWDPPLTDGGKKEARETGERLRTQGWNITRVICSPFLRCVQTAAEVVTALCAVQDDRLAIDPSKVKVSIEYGLCEVMNYIAIRTPPSSPDISWTIDRSELEAILPAGTVDHSVEPVWSELPHWPEKTEKAHERYSKTIQALADEFPRENVLCVTHGEGVGVSVSTFxxxAIVHAVEYCAYSHSQRSIFGSSTNGLNTEKFHILTESGQSGIRFVTSKKSWSNYTSAIVVLYICLKYVSQRDGCAL*

Protein Length: 364

Fln nts: _-_ATGGGGGACGAATATAATTTGGGAGTAATTTTGAATAATTTGTCTGCTATGCGAAGTCTATGCCCCAATCTGGCCAGGACACGATATTCCCACCACTGTATCGAACCTTTGAAATCTTACTCTCAATCTCCTACCTGCATCAATTACAATATCAAGCAGGGGGATTCCAGTGTTCGAATCCTTGATCGAAGACAGAGATTTTCAAATTCTTCTCTTGTTCGTGGTATTGTTATGATTCGCAGCATGGAATCCAGTAGCAAGAAAGAGCCATTCGTGCAGAATTTATTCGTGATGAGGCACGGAGAAAGGATGGACAATTACGATTCGGAGTGGATTCGCTCGGCACAGAGGCCCTGGGATCCTCCATTGACCGACGGTGGCAAAAAAGAGGCTCGGGAGACGGGCGAAAGGCTGAGAACGCAGGGGTGGAATATAACTAGGGTGATCTGTTCCCCGTTCTTGCGTTGTGTTCAGACTGCGGCCGAGGTCGTTACAGCTCTCTGCGCTGTGCAGGATGACCGCCTTGCCATCGATCCTTCTAAGGTCAAGGTGTCAATAGAATATGGTTTGTGTGAGGTAATGAATTACATTGCGATAAGAACCCCACCTTCTTCACCAGACATTAGCTGGACAATTGACCGTTCTGAACTGGAAGCTATTTTACCAGCTGGAACGGTGGACCATTCTGTAGAGCCTGTATGGTCAGAGCTGCCCCATTGGCCAGAGAAAACTGAAAAAGCACATGAGAGATACTCAAAAACGATTCAAGCACTGGCAGATGAATTTCCACGAGAGAATGTTCTATGTGTTACTCATGGTGAAGGTGTTGGAGTTTCAGTTTCTACATTTxxxxxxxxxGCAATTGTTCACGCAGTAGAATATTGTGCATATTCTCACTCTCAAAGATCCATATTTGGCTCTTCAACAAATGGGTTAAACACTGAAAAGTTTCACATTTTGACAGAATCAGGCCAATCAGGGATTCGATTTGTAACAAGTAAAAAATCATGGAGTAATTATACAAGTGCTATTGTTGTGCTTTATATTTGTTTAAAATATGTATCACAGAGAGATGGATGTGCATTATGA___AACAATGAAACAGGATTCAAGATATTTCTTCATGTGC

Fln Alignment:

biogeco2_mira_c16548___MRSLCPNLARTRYSHHCIEPLKSYSQSPTCINYNIKQGDSSVRILDRRQRFSNSSLVRGIVMIRSMESSSKKEPFVQNLFVMRHGERMDNYDSEWIRSAQRPWDPPLTDGGKKEARETGERLRTQGWNITRVICSPFLRCVQTAAEVVTALCAVQDDRLAIDPSKVKVSIEYGLCEVMNYIAIRTPPSSPDISWTIDRSELEAILPAGTVDHSVEPVWSELPHWPEKTEKAHERYSKTIQALADEFPRENVLCVTHGEGVGVSVSTFKxDAIVHAVEYCAYSHSQRSIFGSSTNGLNTEKFHILTESGQSGIRF
A9NPK4__________________MRSVFPNLARTRYSHLWIEPLKSHSHSNTCNKYYIKRRESRVRILEQGYNFSKFSLIRGIVVIRSMESSSKKGPFVQNLFVMRHGERMDNYDPEWIASAPRPWDPPLTDDGKKEARKTGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDQPLAIDPSKVKVSIEYGLCEVMNQFAIRTPPSSPDISWTLDRSELEAILPAGTMDHSVEPVWPELPHWLEKTEKSHERYSKAIQALADKFPRENVLCVTHGEGVGVSVSAFKxDVIVNAVEYCAYSHSQRSIFGSSTDGLNAERFHVLTESDQSGIRF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
817	83		16		0.994512
818		83	16		0.994512
822			16	83	0.994512
823	16		83		0.994512
825			16	16	0.988813
962	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain