SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17879

Length: 679 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17879 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15599	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S21 n=2 Tax=Picea sitchensis RepID=A9NJY4_PICSI	-	-	1.0e-38	97%
FL-Next	sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S21e	IPR001931	-	0.0	-
Sma3	Ribosomal protein S21e, conserved site	IPR018279	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
212		20		80	0.995493
213		20	80		0.995493
214		20		80	0.995493
328	90	10			0.902983
329	90	10			0.902983
382		12		87	0.992554
443		10		90	0.90298
607		10	90		0.903134
608	90	10			0.903134
610			90	10	0.903175
618	87	12			0.992556
619	87	12			0.992556
620	87	12			0.992555
623	71	28			1.0
624		28	71		1.0
625		28		71	1.0
626	71	28			1.0
628			71	28	1.0
652	80	20			0.995493
653	80	20			0.995493
655		20		80	0.995493
665		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain