SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17870

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17870
TGGGATGCATCCCTCCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGACTTTTAAGAAGAATAAAGTCACTTATGTTAAAGGTGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTG

Ace file of the UniGene biog2_v2.0_unigene17870 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23629	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydrolipoyl dehydrogenase n=2 Tax=Picea sitchensis RepID=B8LLJ4_PICSI	-	-	92%
FL-Next	sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	dihydrolipoamide dehydrogenase precursor	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ4

Fln msg: Overlapping hits, possible frame ERROR between 203 and 173, Distance to subject end: 221 aas, your sequence is shorter than subject: 142 - 502

Fln protein: GCIPPKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGxxxxxxxxxxxxAGKIISGNEVSVDLPDGSSSIVKGKHIIIATGSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVI

Protein Length: 143

Fln nts: TGGGATGCATCCCTCCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTG

Fln Alignment:

biogeco2_mira_c16501___GCIPPKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLxxxxxxxxxxGAGKIISGNEVSVDLPDGSSSIVKGKHIIIAT----------------------------------------------------GSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVI
B8LQQ4__________________GCIPSKALLQSSHMFYEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLxxxxxxxxxxGAGKIISGNEVSVDLLDGNSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASEIVPTMDGEVRKSFQRTLEKQKMKFMLKTKVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain