SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17840

Length: 1071 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17840 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6703	11/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP_transf_2 domain containing protein	-	-	2.0e-09	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	phosphopantetheine adenylyltransferase	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		81%
Blast2go	Pyrimidine metabolism	00240		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Pantetheine-phosphate adenylyltransferase.	EC:2.7.7.3	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	81%
Blast2go	lipid metabolic process	GO:0006629	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	growth	GO:0040007	Biological Process	81%
Blast2go	lipid storage	GO:0019915	Biological Process	81%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	81%
Blast2go	regulation of coenzyme A biosynthetic process	GO:0080020	Biological Process	81%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	pantetheine-phosphate adenylyltransferase activity	GO:0004595	Molecular Function	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Dephospho-CoA kinase	IPR001977	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
540		25		75	0.996474
832	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain