SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17836

Length: 1305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17836 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3129	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase catalytic subunit n=1 Tax=Pinus taeda RepID=Q5DI94_PINTA	-	-	90%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	95%
Blast2go	cellulose synthase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	79%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	79%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cellulose synthase	IPR005150	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5DI94

Fln msg: Overlapping hits, possible frame ERROR between 186 and 180, your sequence is shorter than subject: 392 - 1057

Fln protein: SHLQLEEIEEGLEGYEEHEKSWLMSQKSFEKRFGQSPVFITSTLMENGGVPESVNSPALxxxxIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC*

Protein Length: 393

Fln nts: TCCCATCTTCAGCTCGAAGAGATTGAAGAAGGACTTGAAGGTTACGAAGAACATGAGAAATCATGGTTAATGTCGCAGAAGAGCTTTGAAAAAAGATTTGGCCAGTCTCCTGTCTTTATTACATCCACGCTTATGGAAAATGGTGGTGTTCCAGAGTCTGTAAACTCACCTGCTCTGxxxxxxxxxxxxATTCACGTCATAAGTTGCGGATACGAGGAGAAAACTGAATGGGGAAAGGAGATCGGATGGATATATGGTTCAGTGACAGAGGATATCCTGACAGGCTTCAAAATGCACTGCCGTGGTTGGCGATCGGTATACTGCATGCCTCCCAGGCCGGCATTCAAAGGATCAGCTCCTATTAATCTATCAGATCGTTTGCACCAGGTTCTTCGTTGGGCCTTGGGTTCCATAGAAATTTTCCTCAGTAGGCATTGTCCTCTCTGGTATGCCTATGGAGGTAATCTAAAATGGCTTGAAAGATTGGCCTATATCAACACAATCGTGTACCCATTCACCTCAATCCCTCTCGTCGCTTACTGCACGCTCCCCGCCATATGTCTTCTCACAGGAAAATTCATCACTCCAACGCTTACAAGCCTTGCTAGCGTCTGGTTCATGGGACTTTTCTTATCCATCATAGCTACTGGAGTTCTAGAGCTGAGATGGAGCGGAGTGAGCATCGAAGAGTTCTGGAGAAACGAACAGTTCTGGGTCATTGGAGGGGTCTCTGCTCATCTTTTTGCTGTTTTTCAAGGCCTGCTCAAGGTGTTGGGAGGTGTGGACACCAATTTCACAGTCACAGCCAAGGGTAGCGATGAAGAAGACCAATTCGGGGAGTTATACATGTTCAAATGGACGACCCTGCTCATTCCTCCCACTACCTTGCTCATAATAAATCTGGTGAGCTTGGTAGCAGGTGTTTCTGCCGCAGTAAATAATAACTACCAGTCATGGGGACCCCTCTTTGGAAAGCTATTCTTCGCCTGCTGGGTGATATTGCATCTGTATCCCTTCCTCAAGGGTCTTCTGGGAAGGCAGAACAGAACGCCCACTATAGTGATATTGTGGTCTATTCTGCTGGCCTCCATTTTCTCTCTTGTGTGGGTGAGGATCGACCCATTCCTGCCCAAGGTCGAAGGCCCCATTCTTCAGCAATGTGGTGTTGACTGCTAGCTACCTCTTCTCTTCTGATCATTTATGAATTCTATTCATTGGTATTGAGGTTTATTCTATTCATTTGTATTGAGGTTTTGTGATGGACTGAAGGtTAAAACTGAAAGCATTCTGTTAGATAGTTTATGAA

Fln Alignment:

biogeco2_mira_c16368___KSWLMSQKSFEKRFGQSPVFITSTLMENGGVPESVNSPALIxxAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWXXXXXXXXXXXXIXXXXXXXXXXXXXXXNYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC
Q5DI94__________________KSWLMSQKSFEKRFGQSPVFITSTLMENGGVPESVNSPALIxxAIHVISIGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
884		16		83	0.994512
885		16	83		0.994512
887			83	16	0.994512
989	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain