SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17824

Length: 770 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17824 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4842	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SKJ2_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	probable serine threonine-protein kinase at4g35230-like	-	-	85%

Source	ECs	Term	Type	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	85%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	85%
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	85%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	85%
Blast2go	Starch and sucrose metabolism	00500	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	85%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	85%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	85%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	85%
Blast2go	receptor activity	GO:0004872	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	85%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
323		20		80	0.995493
517	66	33			1.0
518		33	66		1.0
519	50	33			1.0
521	33	16		50	1.0
522		16		83	0.994512
525	75			25	0.996473
529		33	66		0.997452
530	33	33			0.997753
531	66	33			0.997452
533			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain