SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17807

Length: 1101 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17807

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23571	2/11
SustainPine v2.0	sp_v2.0_unigene31946	8/11
SustainPine v2.0	sp_v2.0_unigene80523	1/11

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	serine-threonine kinase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	NAF domain	IPR004041	-	-
Sma3	NAF/FISL domain	IPR018451	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN4

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 306 - 433

Fln protein: MNFASNILMGRYEVGRLLGQGSFAKVYLARNLETGQSVAIKATDIEKILKGGMIEQIKREISIMRLVQHPNIVRLYEVMASKTKIYFVMEYVRGGELFNRVVKKGRLKEQEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGDLKVADFGLSALPAQFRQDGLLHTACGTPAYIAPEVVSTKGYNGVKADIWSCGVILFVLMAGYLPFQGANLMAMYKKIYKGDFKCPPWFSSDARRVVVRLMDPNPATRITIPQLMEVSWFRRGFKRAEAMNDLNVNLLDDVESAFFTAKPACLNAFDII

Protein Length: 307

Fln nts: ATGGGGATGTAGGTCTTGGTTTAGAAATGGCATATGCCCAATACATGGAAGATGGCTGAGCTAGCGGATTTATGATCTTTTTTCTCTGAGCAGAGTGAAAATAAAGGTCTTGGCTTAGAAATGGCACATGCCCAAGGCAGGGAAGATGATTGAGCTTTATGATCTTTTTCCTCTGAGCAGAG_-_ATGAACTTCGCGTCCAATATTCTGATGGGGAGGTACGAAGTAGGGCGCTTGCTGGGGCAAGGCTCCTTCGCCAAGGTCTACCTCGCCAGAAACCTCGAGACTGGGCAGAGCGTCGCCATTAAAGCCACCGACATAGAAAAGATCCTCAAGGGCGGGATGATTGAGCAAATTAAACGGGAAATCTCGATTATGAGATTGGTGCAGCACCCCAACATCGTTCGGCTCTACGAAGTCATGGCGAGCAAGACCAAGATTTACTTCGTCATGGAGTATGTTAGAGGCGGCGAGCTCTTCAATCGGGTTGTGAAAAAGGGCAGATTGAAGGAGCAGGAGGCGAGGAAGTATTTTCAACAGCTGATAAGCGCAGTGGATTTCTGCCACAGTCGAGGCGTGTACCACCGAGACCTGAAGCCGGAGAATTTGTTATTAGACGAAAACGGGGACCTGAAGGTCGCAGACTTCGGCCTCAGCGCTCTGCCGGCGCAGTTCAGGCAGGACGGCCTTCTCCACACGGCATGCGGCACGCCGGCGTACATCGCACCGGAGGTCGTTTCGACGAAAGGCTACAACGGTGTCAAGGCCGACATCTGGTCTTGCGGCGTCATACTGTTCGTTCTCATGGCGGGCTACCTGCCGTTCCAAGGCGCGAATCTGATGGCCATGTATAAGAAGATCTACAAGGGGGATTTCAAGTGCCCGCCCTGGTTTTCCTCCGATGCCCGGCGGGTCGTCGTTCGCTTGATGGACCCGAATCCCGCAACGAGGATCACCATTCCGCAGTTAATGGAGGTCTCCTGGTTCCGCCGGGGTTTCAAGCGAGCGGAAGCCATGAACGATTTAAATGTCAACCTTCTCGACGATGTCGAGTCGGCGTTCTTCACCGCCAAACCGGCCTGTCTTAACGCCTTCGACATCATTT

Fln Alignment:

biogeco2_mira_c16256___MNFASNILMGRYEVGRLLGQGSFAKVYLARNLETGQSVAIKATDIEKILKGGMIEQIKREISIMRLVQHPNIVRLYEVMASKTKIYFVMEYVRGGELFNRVVKKGRLKEQEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGDLKVADFGLSALPAQFRQDGLLHTACGTPAYIAPEVVSTKGYNGVKADIWSCGVILFVLMAGYLPFQGANLMAMYKKIYKGDFKCPPWFSSDARRVVVRLMDPNPATRITIPQLMEVSWFRRGFKRAEAMN--DLNVNLLDDVESAFFTAKPACLNAFDII
A9NWN4__________________MNIAPNILMGRYEVGRLLGQGSFAKVYLARNLETGQSVAIKAMNIEKILKGGMIEQIKREISIMRLVQHPNIVLLYEVMASKTKIYFVMEYVKGGELFNRVVEKGRLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLEENGDLKVADFGLSALPAQFKQDGLLHTTCGTPAYLAPEVVSNKGYNGDKADIWSCGVILFVLMAGYLPFQCANLMVMYKKIDKGDFKCPPWFSCDARRLVLRLMDPNPRTRMTVPQLMEVPWFRRGFKRPQAKNEVDVDVGVLDEVESAFFTAKPACLNAFDII

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
36	66		33		0.997457
37			33	66	0.997457
137	80			20	0.995499
140		80	20		0.995494
189	80			20	0.995503
190		80	20		0.995493
191			20	80	0.995493
192			20	80	0.995493
193		80	20		0.995493
258	75			25	0.996473
261			25	75	0.996473
637	33	66			0.997452
638	25		75		0.996474
640	33	33	33		0.997753
646		75		25	0.996474
658		33	33	33	0.997753
661		33	66		0.997452
670	50		50		1.0
673		66		33	0.997452
682		75		25	0.996486
685		66		33	0.997452
694		66		33	0.997452
700	66		33		0.997452
712		33	66		0.997452
715		50	50		1.0
719	66		33		0.997452
734	33	33	33		0.997753
737	33			66	0.997452
738	33	66			0.997452
739		50	50		1.0
741	50	50			1.0
745	66		33		0.997452
748		66		33	0.997452
752	75		25		0.996474
757			25	75	0.996473
759	50			50	1.0
764			66	33	0.997452
769		66		33	0.997452
778		25		75	0.996479
784		66		33	0.997452
788	66		33		0.997452
799		33		66	0.997452
813	66		33		0.997452
814		66		33	0.997452
817			66	33	0.997452
823		75		25	0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain