SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17788

Length: 1039 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17788

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8222	11/14
SustainPine v2.0	sp_v2.0_unigene29614	2/14
SustainPine v2.0	sp_v2.0_unigene29635	1/14

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	uncharacterized protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1618	IPR011676	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABC0

Fln msg: Separated hits, possible frame ERROR between 532 and 553,

Fln protein: MQELAVYPQQQQQQQGVISSSSPCCEDSGDEELSVLPKYTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLELTNGIEVKLQRNALSVIEAPTSHEDAPTGHEDADGNDCENVMSSSSELASDDFPKLHKSKQRPHKTMxxxxxxxxQNHSNELQSTGSRASSHGMLKVDLSKLETTALVRYWKHFNLVDAVPNPSKEQLIDIVQRHFMAQQLDELQVISGFVQAAKRLKTVCN*

Protein Length: 238

Fln nts: GCGGATCTGGTGATTTTGGTTGGCAATTGAGGTGATTTTGACTGGGAATTGAGGTGTTTTGACCGCATTTTCTGTTTCTGTGGTCATTTTTAGCTAGAGAACTTAA_-_ATGCAGGAGTTAGCTGTCTACCCCCAGCAGCAGCAGCAGCAGCAGGGGGTCATATCTTCGTCGTCTCCTTGCTGCGAAGATAGTGGAGATGAGGAGCTTTCTGTACTTCCAAAGTATACTAAGGTTGTTGTTACCGGAAATAACAGGACGAAATCTGTTCTCGTTGGACTTCGTGGCGTCGTCAAGAAGGCCGTTGGGCTGGGGGGATGGCATTGGCTGGAACTTACAAATGGTATAGAAGTGAAGCTACAGAGAAATGCTCTGAGTGTTATAGAAGCACCAACTAGCCATGAGGATGCACCAACTGGACATGAGGACGCTGATGGAAACGACTGTGAAAATGTTATGTCTAGTAGCTCAGAATTAGCTTCTGACGATTTTCCAAAGTTACATAAATCCAAACAGAGGCCCCACAAGACAATGACxxxxxxxxxxxxxxxxxxxxxGCAAAATCATTCTAACGAATTACAGTCCACAGGTTCAAGGGCATCTTCGCATGGAATGCTAAAGGTAGACTTGAGCAAATTGGAAACAACAGCTTTGGTGAGATATTGGAAGCACTTTAATCTGGTAGATGCAGTTCCCAACCCCTCAAAGGAGCAGTTGATTGACATTGTTCAAAGACATTTCATGGCACAGCAATTGGATGAGTTGCAGGTAATATCTGGATTTGTGCAGGCGGCAAAGCGACTCAAGACAGTTTGTAATTGA___ATCCTCACCTTGGCAAAGGAAAGATCTTGTAGAAATGCAGTCATGCAGATCTTATTTGCTTGCTGTGGGAGCTTTATGTATTATATGTAACCTAACAGCTAGTAACTAAGGCTAACATTTACTGTCTTAACGTAGGTGGGCTACTTGTGAATTTATTTGCTCTCCAGCACGCACTTAATGCTGACGTAGCTAGAACCTTAACCTTTTAAACATTTCATCAATT

Fln Alignment:

biogeco2_mira_c16176___MQELAVYPXXXXXXXGVISSSSPCCEDSGDEELSVLPKYTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLELTNGIEVKLQRNALSVIEAPTSHEDAPTGHEDADGNDCENVMSSSSELASDDFPKLHKSKQRPHKTMTxxxxxxxQNHSNELQSTGSRASSHGMLKVDLSKLETTALVRYWKHFNLVDAVPNPSKEQLIDIVQRHFMAQQLDELQVISGFVQAAKRLKTVCN
D5ABC0__________________MQEVVVYPQQQQ---GVISLSSPCCEDSGDEELSVLPKYTKVVVTVNNRTKSVLVGLRGVVKKAVGLGGWHWLELTNGIEVKLQRNALSVIE-------APTGHDDADRNDCENVMSSSSELASDDFAKFHKSKHRPHKTVTxxxxxxxKNHSNELQSTGSRAPSHGMLKVDLSKLETTALVRYWKHFNLVDAVPNPSKEQLIDIVQRHFMAQQLDELQVISGFVQAAKRLKTVCN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
130		66		33	0.997452
132		66		33	0.997457
554	66		33		0.997452
562	33			66	0.997452
648	25		75		0.996475
835		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
131	151	CAG CAG CAG CAG CAG CAG CAG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain