SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17785

Length: 758 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17785

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11722	2/10
SustainPine v2.0	sp_v2.0_unigene25918	1/10
SustainPine v2.0	sp_v2.0_unigene30640	2/10
SustainPine v2.0	sp_v2.0_unigene32376	5/10

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	expansin	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
232	66		33		0.991987
250	66		33		0.997452
252			33	66	0.997452
336	66		33		1.0
341		66	33		1.0
344		33		66	1.0
350		28		71	1.0
356		85		14	0.993533
371	85		14		0.993533
386		28		71	1.0
402	66		33		1.0
408		60		40	1.0
413		40	60		1.0
417		66		33	1.0
420	60		40		1.0
426		66		33	1.0
444		40		60	1.0
459		40		60	1.0
463	40		60		1.0
468			40	60	1.0
486	40	60			1.0
492	50		50		1.0
495		60		40	1.0
507		60	40		1.0
525			50	50	1.0
531			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain